Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G04
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   5.7  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   7.5  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.5  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   9.9  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   9.9  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 271 FYTLYQWFHILSLLDPLCGFCNKCM 197
           F + +QWFH+  ++   C F   C+
Sbjct: 286 FGSSHQWFHVCVIIAAFCHFHGVCI 310


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 295 YKSHSVGRPYSVAAAICSAEGGHL 366
           +K HSVG+P+ V   I   +G  +
Sbjct: 325 HKPHSVGKPFGVELKILDQKGNEM 348


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 VYHGEGLVEDVNCNEPYPYICYRNHTKD 228
           V+  + +V  ++ ++ YPY+ +  H KD
Sbjct: 424 VFMIQEVVSQISASDGYPYVAWVEHCKD 451


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 414 EQVPQDLGFCFTIDDGQVAALR*ADRRRNGIRSSYAMR 301
           +Q+ ++ G    +++  V+ +   D R+NG RSS+ +R
Sbjct: 472 QQIQEEFGSVLQMENRAVSPVY--DSRKNGSRSSFTLR 507


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
 Frame = +1

Query: 172 DVNCNEPYPYICYRNHT------KDLVMTECGTTDKEYKMDQRTNKCYKSHSVGRPYSVA 333
           +++C    P I  R+HT       D V T   T DK  +        Y+S S G P    
Sbjct: 159 ELSCLSSSPMI--RSHTIPSLSFTDQVSTTISTLDKSEQAPSSLGIYYRSPSSGSPIGRT 216

Query: 334 AAICSA 351
            ++C A
Sbjct: 217 KSVCLA 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,484
Number of Sequences: 5004
Number of extensions: 44075
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)