Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G04
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1367 - 36711738-36711774,36711962-36712686,36713217-367132... 32 0.35
08_01_0815 - 7914634-7914740,7915262-7915357,7922268-7922328,792... 29 3.3
04_04_0057 + 22410167-22411330 29 3.3
11_03_0005 - 8871625-8872616,8872807-8872933,8873466-8874209,887... 28 4.4
09_03_0140 + 12700740-12700935,12701082-12701515 28 5.8
07_01_0126 - 947072-948687,949454-949627,950117-951572 28 5.8
12_02_0208 + 15549411-15549740 27 7.6
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513... 27 7.6
>01_06_1367 -
36711738-36711774,36711962-36712686,36713217-36713284,
36714043-36714157
Length = 314
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 154 GEGLVEDVNCNEPYPYICYRNHT---KDLVMTECGTTDKEYKMD 276
G+G +E NC+ P + C ++HT +D + E G E++ D
Sbjct: 163 GQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFD 206
>08_01_0815 -
7914634-7914740,7915262-7915357,7922268-7922328,
7922365-7923621
Length = 506
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = -1
Query: 300 LVTLVSPLVHFILFISGSTFCHY*ILCVVSVTNVWIWLIAVDVLY*AFAVIYDAVFIVIV 121
L+TL V ++FI+ ST CHY I+ S ++ + LI + + ++ + I++
Sbjct: 34 LITLFQLEVLLLMFIAMSTLCHYVIVDAYSTLSM-LMLITFTTITGSNPIVNIMIIILLF 92
Query: 120 IIRV 109
I++
Sbjct: 93 WIKI 96
>04_04_0057 + 22410167-22411330
Length = 387
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 268 KMDQRTNKCYKSHSVGRPYSVAAAICSAEGGHLAI---INSETEAEVLRNLFAQHPAQTL 438
+ ++R + +SHS G +AA + G H + EVLR+L +H A +
Sbjct: 244 RSERRAARLPRSHSTGHSLVASAAAAAESGDHERFTLRLPQHVRDEVLRSLRLRHAASLV 303
Query: 439 TVS 447
+S
Sbjct: 304 NLS 306
>11_03_0005 -
8871625-8872616,8872807-8872933,8873466-8874209,
8874287-8874328,8874898-8874993,8877589-8877662,
8877681-8878344
Length = 912
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 259 KEYKMDQRTNKCYKSHSVGRPYSVAAAICSAEGGH-LAIINSETEAEVLRNLFAQHPAQT 435
+EY+M+ T+K K+ P S + CS G I S++ E + + + +
Sbjct: 764 QEYRMESETDKSNKNSKQSLPSSSSMTDCSTSSGETFKSIKSQSANESNKTVVVKASYKN 823
Query: 436 LTVSFDVL 459
T+ F +L
Sbjct: 824 DTIRFKLL 831
>09_03_0140 + 12700740-12700935,12701082-12701515
Length = 209
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 323 IPLRRRSAQRRAATWPSSIVKQK 391
+P RRR QRR A +S+V+Q+
Sbjct: 104 LPCRRRGGQRRVAVVEASVVRQR 126
>07_01_0126 - 947072-948687,949454-949627,950117-951572
Length = 1081
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 157 EGLVEDVNCNEPYPYICYRNHTKDLVMTECGTTDKEYKMDQRTNKCYKSHSVGRPY-SVA 333
E + E V YP C + ++ L++ EC ++ +M+ N K + G V
Sbjct: 138 EDMSEFVMFLNSYPRFCRQPYSMHLLLDEC-LFSRQMEMEHIMNFLLKEDTTGTENPGVL 196
Query: 334 AAICSAEGGHLAIINSETEAEVLRNLFAQ 420
I + G +I + E +RN F+Q
Sbjct: 197 PIIGPGKVGKSTLIEHACDDERVRNHFSQ 225
>12_02_0208 + 15549411-15549740
Length = 109
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = -1
Query: 300 LVTLVSPLVHFILFISGSTFCHY*ILCVVSVTNVWIWLIAVDVLY*AFAVIYDAVFIVIV 121
L+TL V ++FI+ ST CHY I+ S ++ + LI + + ++ I++
Sbjct: 34 LITLFQLEVLLLMFIAMSTLCHYVIVDAYSTLSM-LMLITFTTITGSNPIVNIMTIILLF 92
Query: 120 IIRV 109
I++
Sbjct: 93 WIKI 96
>03_06_0125 +
31850858-31850905,31851032-31851109,31851221-31851337,
31851346-31851642,31852498-31852509,31852737-31852822,
31853516-31853660,31853767-31853862,31854333-31854424,
31854696-31854797,31854891-31855037,31855116-31855266,
31855418-31855480,31855570-31855806,31856081-31856185,
31856263-31856376,31856459-31857037,31857279-31857286,
31857858-31858004,31858077-31858203
Length = 916
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = +1
Query: 88 PIKWMPGXXXXXXXXXXCIVYHGEGLVEDVNCNEPYPYICYRNHTKD-LVMTECGTTDKE 264
P P C V HG + + P +C + H +M+EC D +
Sbjct: 709 PFMSFPSPQSQPYSPSACFVQHGFSTMSYLRNQHETPTVCRQEHLSSYYMMSECSPFDGD 768
Query: 265 YKMDQRTN 288
K Q+TN
Sbjct: 769 GK--QKTN 774
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,465
Number of Sequences: 37544
Number of extensions: 316301
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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