Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G04
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0) 34 0.068
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.090
SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08) 33 0.12
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10) 31 0.84
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23) 30 1.1
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 30 1.1
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06) 30 1.5
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 1.9
SB_56272| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 5.9
SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17) 28 5.9
SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4) 28 5.9
SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27) 27 7.8
SB_49003| Best HMM Match : Lectin_C (HMM E-Value=1e-09) 27 7.8
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +1
Query: 244 CGTTDKEYKMDQRTNKCYKSHSVGRPYSVAAAICSAEGGHLAIINSETEAEVLRNLFAQH 423
C + +++ Q + C+K S RP+ A+ C GG+L I+S E + NLF
Sbjct: 1528 CSRCLEGWEIYQANHSCFKFVSEKRPWKDASRYCQNIGGNLTSIHSAEENVFVSNLFLIG 1587
Query: 424 PAQTLTVSFDVLIRLGFYNWDEG 492
+ + L + W +G
Sbjct: 1588 EGNAYWIGLNDLKNEKAFVWSDG 1610
>SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 35.5 bits (78), Expect = 0.029
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 232 VMTECGTTDK---EYKMDQRTNKCYKSHSVGRPYSVAAAICSAEGGHLAIINSETEAEVL 402
+ T+CG D + KCY +V P++ A C G L I+N+ E E +
Sbjct: 47 LQTKCGVIDSSTCDSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTLVIVNNLMENEFI 106
Query: 403 RNL 411
R+L
Sbjct: 107 RSL 109
>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 577
Score = 34.3 bits (75), Expect = 0.068
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 286 NKCYKSHSVGRPYSVAAAICSAEGGHLAIINSETE-AEVLRNL 411
+ CY+ + P+S A +C EGG L I+S E A +LRN+
Sbjct: 165 DSCYRMSYIKLPWSEAREVCKKEGGDLVSIHSAFEQAFLLRNM 207
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 33.9 bits (74), Expect = 0.090
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 1/161 (0%)
Frame = +1
Query: 16 YTGIHATVSDGDFNSLDNVPLFEIPIKWMPGXXXXXXXXXXCI-VYHGEGLVEDVNCNEP 192
+ G + ++ +N D W G C + + +GL D +C++
Sbjct: 50 WVGFNDRANESSYNWTDGTAK-PFYTNWRRGEPNNFQDNEDCTELLYQDGLWNDDDCSKE 108
Query: 193 YPYICYRNHTKDLVMTECGTTDKEYKMDQRTNKCYKSHSVGRPYSVAAAICSAEGGHLAI 372
Y +IC K + + G + Q CYK + + + +A C GG+L
Sbjct: 109 YSFIC--KTLKAPLSCDAGWS-------QYGASCYKFSTSSKTWLIAQQDCHQSGGYLVK 159
Query: 373 INSETEAEVLRNLFAQHPAQTLTVSFDVLIRLGFYNWDEGN 495
+++ E L + Q + + G Y W+ N
Sbjct: 160 VDNSDEQHFLSYMMKTVMKQAAWIGLNDRAIEGTYVWEGDN 200
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +1
Query: 94 KWMPGXXXXXXXXXXCIVYHGEGLVEDVNCNEPYPYICYR 213
+W P C+V G DV C PY+C R
Sbjct: 1394 RWGPAEPDSHSGQQPCVVLKSTGYWGDVGCYATRPYMCKR 1433
>SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)
Length = 129
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 289 KCYKSHSVGRPYSVAAAICSAEGGHLAIINSETEAEVLRNL 411
KCY +V P++ A C G L I+N+ E E +R+L
Sbjct: 12 KCYFLSTVEEPWTAAERSCRVRGSTLVIVNNLMENEFIRSL 52
>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
Length = 849
Score = 30.7 bits (66), Expect = 0.84
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 292 CYKSHSVGRPYSVAAAICSAEGGHLAIINSETEAEVLRNLFAQHPAQTLT-VSFDVLIRL 468
CYK H+ + + C+ EG L I+ + L+ L + L V + I+
Sbjct: 153 CYKRHTDKKTWMGGVVECAKEGAILTDISDAMQETTLKGLKGKDNKDKLAWVGLNDRIKE 212
Query: 469 GFYNWDEGNYFRTLDGQTLEAAG 537
Y++ GN L+ +T E G
Sbjct: 213 SIYSYVGGNPIEHLNWKTGEPQG 235
>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
Length = 1084
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 190 PYPYICYRNHTKDLVMTECGTTDKEYKMDQRTNKCYKSHSVGRPY 324
PYP RN T + V C KE+ + +SHS RPY
Sbjct: 578 PYPPSYPRNGTTEGVAFRCEQCQKEFDTSAALERHRRSHSGERPY 622
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 283 SFGPFYTLYQWFHILSLLD 227
+FG +Y+LY+WFH L L D
Sbjct: 165 TFGLYYSLYEWFHPLYLED 183
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 26 FTQPYPTVTSTHWTMYLCLRYQ*NGCPVT 112
F Y + T W +CLR + GCPVT
Sbjct: 1623 FIARYVRINPTSWESSICLRAEIYGCPVT 1651
>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
Length = 583
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Frame = +1
Query: 184 NEPYPYICYRNHTKDLVMTECGTTDKEYKMDQR----TNKCYKSHSVGRPYSVAAAICSA 351
N+ Y C R D V+T TT YK Q KCY S ++ C
Sbjct: 68 NDAGLYTC-RAQAGDEVVT--ATTYLRYKCKQGWYYYNGKCYHYSSFEETWTQGQRYCLD 124
Query: 352 EGGHLAIINSETEAEVLRNL 411
+ LAIIN E E +R +
Sbjct: 125 QDADLAIINDREENEFIRTI 144
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 26 FTQPYPTVTSTHWTMYLCLRYQ*NGCPV 109
F Y + +HW + C+R + GCPV
Sbjct: 1171 FATRYLRILPSHWNIDACMRVELRGCPV 1198
>SB_56272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +1
Query: 43 DGDFNSLDNVPL-FEIPIKWMPGXXXXXXXXXXCI-VYHGEGLVEDVNCNEPYPYICYRN 216
DG F DN L F W G C+ +Y GL DV C+ P IC R
Sbjct: 20 DGSFRWTDNSNLTFR---NWNSGEPNNYEGQEKCVELYVRSGLWNDVKCSNLRPSICKRG 76
Query: 217 HT 222
+T
Sbjct: 77 YT 78
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -1
Query: 228 ILCVVSVTNVWIWLIAVDVLY*AFAVIYDAVFIVIVIIRVTGHPFYWYL 82
I+ + V + I +I + ++ +I + IVI+II ++ HP + +L
Sbjct: 525 IIIAIIVIIIVIIIIVIIIVIIIILIIIVIIIIVIIIIAISTHPHHHHL 573
>SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17)
Length = 412
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Frame = +1
Query: 202 ICYRNHTKDLVMTECGTTDKEYKMDQRTNK--CYKSHSVGRPY------SVAAAICSAEG 357
+CYR ++DL + D D+R+ C+ + G P+ + A+ S E
Sbjct: 283 LCYRKSSEDLSLLGYSDADWASSTDRRSTSGYCFSLNDTGPPFYWKSKKQTSVALSSCEA 342
Query: 358 GHLAIINSETEAEVLRNLFA--QHPAQTLTVSFD 453
++A+ + E+ L L + + Q +T+ D
Sbjct: 343 EYVALAYAVQESLYLTQLLSDLKESCQPVTIFED 376
>SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4)
Length = 283
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Frame = +1
Query: 202 ICYRNHTKDLVMTECGTTDKEYKMDQRTNK--CYKSHSVGRPY------SVAAAICSAEG 357
+CYR ++DL + D D+R+ C+ + G P+ + A+ S E
Sbjct: 118 LCYRKSSEDLSLLGYSDADWASSTDRRSTSGYCFSLNDTGPPFYWKSKKQTSVALSSCEA 177
Query: 358 GHLAIINSETEAEVLRNLFA--QHPAQTLTVSFD 453
++A+ + E+ L L + + Q +T+ D
Sbjct: 178 EYVALAYAVQESLYLTQLLSDLKESCQPVTIFED 211
>SB_52478| Best HMM Match : NHL (HMM E-Value=1e-27)
Length = 1387
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 178 NCNEPYPYICYRNHTKDLVMTECGTTDKEYKM 273
+C+ P +CY H + + TEC + K K+
Sbjct: 743 SCDSKSPLVCYCFHCGEFLCTECWSAHKLVKV 774
>SB_49003| Best HMM Match : Lectin_C (HMM E-Value=1e-09)
Length = 130
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +1
Query: 13 VYTGIHATVSDGDFNSLDNVPLFEIPIKWMPGXXXXXXXXXXCIVYHG--EGLVEDVNCN 186
V+ G++ ++G+F D+ P + PG C+V EG D C+
Sbjct: 62 VWLGLNDKTTEGNFFWQDSEPASYQ--NFAPGHPNSPGDDTDCVVARDSDEGKWADTKCD 119
Query: 187 EPYPYICYR 213
PYIC +
Sbjct: 120 AKRPYICMK 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,684,925
Number of Sequences: 59808
Number of extensions: 360819
Number of successful extensions: 830
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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