Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G04
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domai...    30   1.2  
At5g43400.1 68418.m05305 expressed protein strong similarity to ...    29   1.6  
At1g23230.1 68414.m02906 expressed protein                             27   6.4  
At1g08810.2 68414.m00980 myb family transcription factor (MYB60)       27   6.4  
At1g08810.1 68414.m00981 myb family transcription factor (MYB60)       27   6.4  
At2g33630.1 68415.m04123 3-beta hydroxysteroid dehydrogenase/iso...    27   8.4  
At1g78800.1 68414.m09184 glycosyl transferase family 1 protein c...    27   8.4  
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    27   8.4  

>At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 692

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 445 SFDVLIRLGFYNWDE--GNYFRTLDGQ 519
           SF+ L+  GFY+ D   GN+ RT DGQ
Sbjct: 330 SFNQLLEYGFYHADPHPGNFLRTYDGQ 356


>At5g43400.1 68418.m05305 expressed protein strong similarity to
           unknown protein (emb|CAB86628.1)
          Length = 655

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 409 LFAQHPAQTLTVSFDVLIRLGFYNWDEGNYFRTLDGQTLEAAGYAKWAK 555
           L+  HP +TL ++   L+  G++       FR L+GQ +E      W K
Sbjct: 128 LYKNHP-KTLALNVPALVDFGYFKDLPEILFRILEGQNMERGKNRVWRK 175


>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +1

Query: 295  YKSHSVG--RPYSVAAAICSAEGGHLAIINSETEAEVLRNLFAQHPAQTLTVSFDVLI 462
            Y SHS    R Y  A A C    GH   INS   A VLR +  +     +    DVL+
Sbjct: 947  YLSHSFPQHRQYLCAGA-CLLMQGHAENINSTNLARVLREVSPEEVTANIYTLVDVLL 1003


>At1g08810.2 68414.m00980 myb family transcription factor (MYB60)
          Length = 197

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +1

Query: 250 TTDKEYKMDQRTNKCYKSHSVGRPYSVAAAICSAEGGHLAIINSETE 390
           TT  E+KM  RTN     HS   PY       S E GH   IN + +
Sbjct: 89  TTFLEHKMQNRTNNFIDHHSDQFPYEQLQG--SWEEGHSKGINGDDD 133


>At1g08810.1 68414.m00981 myb family transcription factor (MYB60)
          Length = 280

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +1

Query: 250 TTDKEYKMDQRTNKCYKSHSVGRPYSVAAAICSAEGGHLAIINSETE 390
           TT  E+KM  RTN     HS   PY       S E GH   IN + +
Sbjct: 172 TTFLEHKMQNRTNNFIDHHSDQFPYEQLQG--SWEEGHSKGINGDDD 216


>At2g33630.1 68415.m04123 3-beta hydroxysteroid
           dehydrogenase/isomerase family protein contains Pfam
           profile PF01073 3-beta hydroxysteroid
           dehydrogenase/isomerase domain; similar to
           NAD(P)-dependent cholesterol dehydrogenase [Nocardia
           sp.] [GI:216809]
          Length = 480

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 192 WLIAVDVLY*AFAVIYDAVFIVIVIIRVTGHPFYWYLKQR 73
           +L A+ + +     I  AVFIV V++ V    + W+L +R
Sbjct: 408 FLRAIHLFFFRTITIVKAVFIVAVVLHVAEGIYAWFLAKR 447


>At1g78800.1 68414.m09184 glycosyl transferase family 1 protein
           contains similarity to glycosyltransferase GI:871530
           from [Saccharomyces cerevisiae], Alg2
           mannosyltransferase [gi:3868942] from Rhizomucor
           pusillus; contains Pfam profile: PF00534 Glycosyl
           transferases group 1
          Length = 403

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 498 IVALVPIVETQSN*NIKRDGEGLSGMLCEQVPQDLGFCFT--IDDGQVAALR*ADRRRNG 325
           + A  P++   S   ++    G++G LCE  P+D        I++ ++A    A+ R + 
Sbjct: 317 MAAYKPVIACNSGGPVETVKNGVTGYLCEPTPEDFSSAMARFIENPELANRMGAEARNHV 376

Query: 324 IRS 316
           + S
Sbjct: 377 VES 379


>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 261 FISGSTFCHY*ILCVVSVTNVWIWLI 184
           FISGST C   I C++    +W++ I
Sbjct: 870 FISGSTDCLVGIKCLIGKMFIWLFFI 895


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,143,825
Number of Sequences: 28952
Number of extensions: 241092
Number of successful extensions: 563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)