Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G03
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 97 2e-21
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 73 2e-14
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 67 1e-12
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 58 8e-10
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 54 2e-08
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 29 0.58
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 3.1
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 25 5.4
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 7.2
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 7.2
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 9.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.5
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 9.5
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 9.5
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 96.7 bits (230), Expect = 2e-21
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 5/165 (3%)
Frame = +3
Query: 57 VNNYPLPKITKDTDVIVKVEYSGVCGTDLHIIQ----GEFPALKDRPFPLGHESSGIIHE 224
+ + P +T D V V ++ +G+CG+D+H + G+F + +P LGHES+G++ E
Sbjct: 18 IEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDF--ILKKPMILGHESAGVVVE 75
Query: 225 VGTA-SIFKKGQKVAVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCVP 401
VG S K G VAV+P C LC++CRSG Y C +T DG Y
Sbjct: 76 VGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPY--DGTLRTYYITT 133
Query: 402 QDQVYALPDGITTEQAGLCEPYSCVSHGFKRASPVSVGKKILIVG 536
+D LP I+ E+ L EP S H R + + G ++L++G
Sbjct: 134 EDFCTKLPKQISVEEGALFEPMSVAVHAMTRGN-LKCGSRVLVMG 177
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 73.3 bits (172), Expect = 2e-14
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 4/152 (2%)
Frame = +3
Query: 96 DVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVGT-ASIFKKGQKVAVD 272
+V+V ++Y+GVC TDLH +QG++P P GHE +G++ +VG + K G +V V
Sbjct: 35 EVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVK 94
Query: 273 -PNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCVPQDQVYALPDGITTEQA 449
N +C CE+C C ++ G DG + Y +P+ + E A
Sbjct: 95 WMNSSCGNCEYCMKAEETICPHIQLS---GYTVDGTFQHYCIANATHATIIPESVPLEVA 151
Query: 450 G--LCEPYSCVSHGFKRASPVSVGKKILIVGA 539
+C +C + + S V G+ I I GA
Sbjct: 152 APIMCAGITC--YRALKESKVGPGEWICIPGA 181
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 67.3 bits (157), Expect = 1e-12
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 12 MEAVLFDGKTSTLKYVNNYPLPKITKDTDVIVKVEYSGVC-GTDLHIIQGEFPALKDRPF 188
M+A ++DG + + P P IT DVIVK +C G+D HI GE P ++
Sbjct: 37 MKACVWDGPLNVK--IAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAI 94
Query: 189 PLGHESSGIIHEVGT-ASIFKKGQKVAVDPNRACNLCEFCRSGNYQYCLT 335
LGHES GI+ E G + + G +V + + AC C FC+ Y C T
Sbjct: 95 -LGHESCGIVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACDT 143
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 58.0 bits (134), Expect = 8e-10
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +3
Query: 87 KDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVGTASI-FKKGQKV 263
K +V VKV++S VC TD + + G P P LGHE +GI+ +G I + G V
Sbjct: 33 KAHEVRVKVDWSAVCHTDAYTLSGVDPE-GAFPIVLGHEGAGIVESIGEGVINVRPGDHV 91
Query: 264 AVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDG 374
+ C C+FCRSG C G+ DG
Sbjct: 92 ILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDG 128
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 53.6 bits (123), Expect = 2e-08
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +3
Query: 96 DVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVG-TASIFKKGQKVAVD 272
+V +K+ SGVC TD + + G+ P P LGHE +GI+ VG + + G V
Sbjct: 39 EVRIKIVNSGVCHTDAYTLSGKDPE-GLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97
Query: 273 PNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDG 374
C C+FC+SG C G+ DG
Sbjct: 98 YTPECKTCKFCKSGKTNLCGRIRTTQGKGLMPDG 131
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 28.7 bits (61), Expect = 0.58
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 348 STIGIWKDGGWAQYVCVPQDQVYALPDGIT-TEQAGLCEPYSCVSHGFKRASPVSVGKKI 524
S + KDG A+Y +P+ +P ++ TE A + P++ R +
Sbjct: 94 SELSFTKDGTHAEYCIIPEKAAVRMPSNLSFTEAASVGVPFTTAYLALSRGE-TKGSDIV 152
Query: 525 LIVGA 539
L+VGA
Sbjct: 153 LVVGA 157
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 46 PLNTSTIILYPRLQKTRMS*SKWNTL 123
PL + I+LY R Q TRM ++WN L
Sbjct: 386 PLCCAKILLYARRQLTRM--ARWNNL 409
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 228 GTASIFKKGQKVA----VDPNRACNLCEFCRSGNYQYCLTAGINSTIGIW 365
GT ++ G VA +R N + +G+ Y +TAG ++ I +W
Sbjct: 164 GTVKVWSFGSSVANFTLQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVW 213
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 303 CRSGNYQYCLTAGINSTIGIWK 368
C S + + CLTAG S + +W+
Sbjct: 222 CVSPDAKRCLTAGTGSDVKVWE 243
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +3
Query: 186 FPLGHESSGIIHEVGTASIFKKGQKVAVDPNRACNLC 296
F +G ++S + HE+ T + + + + ++PN +C C
Sbjct: 805 FEIG-QASEVAHEIQTNAENMRNRYIVLEPNESCWHC 840
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 18 AVLFDGKTSTLKYVNNYPLPKITK 89
A +FDG++ST+K V N P+ +
Sbjct: 638 AFIFDGESSTMKLVGNPSGPEFER 661
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 423 PDGITTEQAGLCEPYSCVSHGFKRASPVSVGKKIL 527
PD T + G+ PY H +RA V GK +
Sbjct: 1525 PDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFM 1559
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 97 MS*SKWNTLESAVLISILFRVNS 165
M S+W TL + +LIS L+ VN+
Sbjct: 1 MKFSQWYTLTAPLLISSLYTVNA 23
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 161 FTLNNMEISTADSRVFHFDYDIRVFCNLG*RIIVDVFKGR 42
+ L +E + VF+ D +I++ NL ++VD +G+
Sbjct: 556 YNLYLVEFKAGRADVFYIDDNIKLSLNLNDYVVVDADRGQ 595
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,526
Number of Sequences: 5004
Number of extensions: 45906
Number of successful extensions: 151
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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