Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G03
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)             153   7e-38
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   6e-29
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            85   3e-17
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     48   6e-06
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            42   3e-04
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.037
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.085
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)            31   0.60 
SB_27017| Best HMM Match : WD40 (HMM E-Value=5.8e-12)                  31   0.80 
SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2)                     31   0.80 
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_33862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_17875| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   8.8  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   27   9.8  
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  
SB_49579| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score =  153 bits (372), Expect = 7e-38
 Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
 Frame = +3

Query: 24  LFDGKTSTLKYVNNYPLPKITKDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHE 203
           L+DG+ S +      P+P ++  ++VIVKV YSG+C  DL I++GE PA K     LGHE
Sbjct: 55  LWDGQLSVI----TRPVPHVSNPSEVIVKVAYSGICDRDLQILEGELPAAKC--VVLGHE 108

Query: 204 SSGIIHEVGT-ASIFKKGQKVAVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGW 380
            SG++ +VG+       G +V V+PN +CN C+ CR G   +C   G  S IG+WK+GGW
Sbjct: 109 FSGVVSDVGSDVKNVSIGDRVVVNPNSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNGGW 168

Query: 381 AQYVCVPQDQVYALPDGITTEQAGLCEPYSCVSHGFKRASPVSVGKKILIVG 536
            QY  V    ++ +P  ++ +QA LCEP SCV HG  +  P +   KIL+ G
Sbjct: 169 TQYARVHAPNIHIVPPQVSLKQAALCEPISCVLHGLDKLHPAARDSKILVSG 220


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score =  124 bits (298), Expect = 6e-29
 Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
 Frame = +3

Query: 69  PLPKITKDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVGT-ASIF 245
           P P +    DV+VK+ YS V GTDLH+++G     K     LGH+  GI+ E+G      
Sbjct: 18  PTPHVQSPRDVVVKIAYSAVSGTDLHVLEGRIDCAKS--IILGHQFVGIVKEIGADVQHV 75

Query: 246 KKGQKVAVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCVPQDQVYALP 425
             G +V ++P  +C +C+FC  G    C   G N+ IGI ++GGWAQ+  +    V  LP
Sbjct: 76  SVGDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNGGWAQFCRLSAKNVIPLP 135

Query: 426 DGITTEQAGLCEPYSCVSHGFKRASPVSVGKKILIVGA 539
             +T EQA   EP SC+  G+    P+    ++LI GA
Sbjct: 136 HQVTFEQALFSEPMSCILRGWDLLVPLQTDAEVLICGA 173


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 5/152 (3%)
 Frame = +3

Query: 99  VIVKVEYSGVCGTDLHIIQ----GEFPALKDRPFPLGHESSGIIHEVGTA-SIFKKGQKV 263
           V + +   G+CG+D+H  +    G+F  +   P  LGHESSG+I  VG   S  K+G +V
Sbjct: 22  VQISMHTVGICGSDVHYWKHGCIGDF--VLTAPMVLGHESSGVICAVGEGVSDLKEGDRV 79

Query: 264 AVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCVPQDQVYALPDGITTE 443
           A++P   C  C +C+ G Y  C  A +N        G   +      D  Y LPD ++ E
Sbjct: 80  AIEPGTPCRTCSYCKKGRYNLC--AKMNFCATPPYHGSLCRRYNHQADFCYKLPDHVSLE 137

Query: 444 QAGLCEPYSCVSHGFKRASPVSVGKKILIVGA 539
           +  L EP S   H   RA  +++G  +L+ GA
Sbjct: 138 EGALLEPLSVGVHACNRAG-ITIGSNVLVCGA 168


>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
 Frame = +3

Query: 12  MEAVLFDGKTSTLKYVNNYPLPKITKDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFP 191
           M+AVLF        Y+ + P PK+ K+T+V+++V ++ +   D    +G +P        
Sbjct: 28  MKAVLFTPGGPESMYIGDAPRPKL-KETEVLIRVHFTALNRADTLQRKGSYPPPPGESEI 86

Query: 192 LGHESSGIIHEVGTASI--FKKGQKV 263
           LG E SGI+ E+G+A    ++KG KV
Sbjct: 87  LGLEVSGIVEELGSACNLGWRKGDKV 112


>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 12  MEAVLFDGKTSTLKY-VNNYPLPKITKDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPF 188
           M +V+  G     K  V  Y  PK  +   V+VKV   GV   DL   QG FP     P+
Sbjct: 39  MRSVVLTGHGGNNKIKVEKYARPKPMQG-QVVVKVHACGVTFADLLQRQGHFPLAPKPPY 97

Query: 189 PLGHESSGIIHEVG 230
             G E SG++ E+G
Sbjct: 98  VCGFECSGVVEELG 111



 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 372 GGWAQYVCVPQDQVYALPDGITTEQ 446
           G W +Y CV     Y +P+ +T E+
Sbjct: 130 GMWTEYACVDAKMCYVMPEAMTFEE 154


>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 35.1 bits (77), Expect = 0.037
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 87  KDTDVIVKVEYSGVCGTDLHIIQGEFPALKDRPFP--LGHESSGIIHEVG 230
           K  +V +K+  +GVC TD + + G  P   +  FP  LGHE  GI+  VG
Sbjct: 27  KAHEVRIKILATGVCHTDAYTLSGVDP---EGLFPCILGHEGGGIVESVG 73


>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 33.9 bits (74), Expect = 0.085
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 99  VIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVG 230
           V++K+  + V   + +I  G +  L + PF  G+  +GIIH +G
Sbjct: 290 VLIKLSAASVSPVETYIRSGSYARLPELPFTPGNYGAGIIHAIG 333


>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
          Length = 676

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 96  DVIVKVEYSGVCGTDLHIIQGEFPALKDRPFPLGHESSGIIHEVG 230
           +V+VK  Y+G+  TD++   G +      PF  G E  G +   G
Sbjct: 40  EVLVKTRYAGINATDINHTAGRYKPWNKPPFDAGLEGLGEVVATG 84


>SB_27017| Best HMM Match : WD40 (HMM E-Value=5.8e-12)
          Length = 490

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 327 CLTAGINSTIGIWKDGGWAQYVCVPQDQVYALPDGITTEQAGLCEPY 467
           C+ AGI   I   ++GG+ +Y+ +P + + A+      E+     PY
Sbjct: 289 CIVAGIQEVISDGREGGYGRYLMLPLEIIPAVKQPALPERHEAWAPY 335


>SB_2180| Best HMM Match : DUF293 (HMM E-Value=4.2)
          Length = 289

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 372 GGWAQYVCVPQDQVYALPDGITTEQAGLCEPYSCVSH 482
           G W +Y  + +DQV  +PD I+ E A       C ++
Sbjct: 137 GSWTRYHVLSEDQVIKVPDYISVEMAATLSVNPCTAY 173


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 83  YKRHGCHSQSGILWSL 130
           Y+R+GC+SQS   WSL
Sbjct: 101 YRRNGCYSQSTKTWSL 116


>SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 266 GNFLALFKDRCGAHFVNYTAGFMTQRKGTILQCWE 162
           G++++LF     A+F+  + GF   RKG + + +E
Sbjct: 56  GSYISLFVSMPFAYFITESEGFAGSRKGIMARVYE 90


>SB_33862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 249 KGQKVAVDPNRACNLCEFCRSGNYQYCLTAGINSTIGIWKDGGWAQYVCV 398
           KGQ    D +  C++  +C SG+Y  C +A + + + +W++     + CV
Sbjct: 90  KGQDYPFDHH--CDV--YCCSGDY--CNSASLPALVFVWREANQRSFTCV 133


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 285  CNLCEFCRSGNYQYCLTA 338
            CN C FC+   + Y LTA
Sbjct: 1899 CNACGFCKYAKFDYTLTA 1916


>SB_17875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 24.2 bits (50), Expect(2) = 8.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 219 ELYRWIHDPKERDDP 175
           ELYR  +DP+ R+DP
Sbjct: 2   ELYRTRNDPRTRNDP 16



 Score = 21.8 bits (44), Expect(2) = 8.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 201 HDPKERDDPSMLGIHPE 151
           +DPK R+DP      PE
Sbjct: 14  NDPKTRNDPQKFPTDPE 30


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 414  YALPDGITTEQAGLCEPYSCVSHGFKRA 497
            YALPDG  +++A +  P   +S+G+  A
Sbjct: 1041 YALPDGTVSDRATMEIPAGALSYGYYHA 1068


>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 309 SGNYQYCLTAGINSTIGIWKDGGWAQYVCVPQDQVYALPD 428
           S N Q+C+ AG+ S  G+ +      +VC+ Q + +   D
Sbjct: 395 SPNGQFCVLAGLRSMSGVLEFHDTGDWVCMNQAEHFMATD 434


>SB_49579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 309 SGNYQYCLTAGINSTIGIWKDGGWAQYVCVPQDQVYALPD 428
           S N Q+C+ AG+ S  G+ +      +VC+ Q + +   D
Sbjct: 14  SPNGQFCVLAGLRSMSGVLEFHDTGDWVCMNQAEHFMATD 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,828,190
Number of Sequences: 59808
Number of extensions: 341873
Number of successful extensions: 1014
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)