Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_G01
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   0.93 
01_01_0106 + 788967-789555,790139-790162,790339-791411                 30   1.2  
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    27   8.5  
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    27   8.5  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 0.93
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 417 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 316
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 0.93
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 285 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 193
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 349 PRLNHKPFSVTIDVKSDIATDA--VIKIFLGPKYNDYGFPITLEENWHKFYELDWFTHKI 522
           P L  + F V I  KSD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 523 TPGQNKIV 546
             GQN ++
Sbjct: 491 FTGQNLLI 498


>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +1

Query: 154 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 333
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 334 FKVRQPRLNHKPFSVTIDVKSDIAT 408
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +1

Query: 154 INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 333
           +N F+  L PYP  ++HF+      V+  +       S  + TNS F     +    P +
Sbjct: 252 VNEFQTNLVPYP--RIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRH 309

Query: 334 FKVRQPRLNHKPFSVTIDVKSDIAT 408
            K     L ++   V  DV + +AT
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVAT 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,304
Number of Sequences: 37544
Number of extensions: 295048
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)