Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_G01
(591 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 31 0.61
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 30 1.4
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 30 1.4
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 2.5
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 29 2.5
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 4.3
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 4.3
Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical p... 28 5.7
Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical pr... 28 5.7
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 27 7.5
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 7.5
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 27 10.0
U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical pr... 27 10.0
AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical... 27 10.0
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 31.1 bits (67), Expect = 0.61
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 364 KPFSVTIDVKSDIATDAVIKIFLG-PKYNDYGFPITLEENWHKFYELDWFTHKITPGQNK 540
K F V I S+I + ++++F Y PI + H FY L++F K+T +
Sbjct: 143 KTFGVKI-ASSEIQSSHLLELFPSLSNLGVYNVPINTQILTHNFYWLEFFKTKVTL-DDI 200
Query: 541 IVRNSNEFSLFKEDSLP 591
+V N ++FS+ + ++LP
Sbjct: 201 LVSNCSKFSI-EYNNLP 216
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +1
Query: 145 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 312
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 313 KTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDYGF 459
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +1
Query: 145 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 312
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 313 KTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDYGF 459
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 351 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 202
W+TNL + NL+F +Y + G L ++ + + +++ F EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
protein C46A5.4 protein.
Length = 1432
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 331 NFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDYGFPITLEENWHKFYELDWF 510
N + +P L+ P T K DIA I + D+G P L+ W F +LD F
Sbjct: 452 NAPIEKPGLHSSPLLRTAFQKKDIADSVDIIAMVIQMGRDHGLPSYLQ--WRTFCKLDDF 509
Query: 511 T 513
+
Sbjct: 510 S 510
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 50 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 175
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 50 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 175
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical
protein ZK673.11b protein.
Length = 338
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 238 EKLVTFFDYSQFDATNSVFLTKKEIKTS-YPHNFKVRQPRLNHKPFSVTIDVKSDIAT 408
E V+ +++S+ NS + I S Y +NF V N + F +I +SD+A+
Sbjct: 229 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 286
>Z48585-9|CAD59166.1| 347|Caenorhabditis elegans Hypothetical
protein ZK673.11a protein.
Length = 347
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 238 EKLVTFFDYSQFDATNSVFLTKKEIKTS-YPHNFKVRQPRLNHKPFSVTIDVKSDIAT 408
E V+ +++S+ NS + I S Y +NF V N + F +I +SD+A+
Sbjct: 238 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 295
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 440 LGPKKILITASVAISDLTSMVTLKGLWLSRG*RTLK 333
+G TAS++ D+ M+ LW+SR LK
Sbjct: 1932 IGTSSETTTASISYQDIPEMLAASKLWISRNSEKLK 1967
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 440 LGPKKILITASVAISDLTSMVTLKGLWLSRG*RTLK 333
+G TAS++ D+ M+ LW+SR LK
Sbjct: 1932 IGTSSETTTASISYQDIPEMLAASKLWISRNSEKLK 1967
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 2 NDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYIT 139
++L K++ H + STS+ P +TF+ P FE + S +T
Sbjct: 332 SELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377
>U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical
protein C01F1.5 protein.
Length = 308
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 49 KPFDKHTFMPSALDFYQTALRDPAFYQLYNR 141
KP K F PS DF + LRD AF Q+ R
Sbjct: 56 KPVQKVYFWPSLTDFEKNVLRD-AFAQIGRR 85
>AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical
protein Y82E9BL.1 protein.
Length = 124
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 531 PRSYLVREPIQFVEFMPVFFQCDGESIIVV 442
P+S L+R+PIQ V+ V CDGE+ + +
Sbjct: 93 PQS-LLRKPIQIVDDCSVKMYCDGEAKLFI 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,728
Number of Sequences: 27780
Number of extensions: 274275
Number of successful extensions: 756
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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