Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F24
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   4.1  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   5.4  
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    25   7.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.5  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 252 STYRHSLLIT*DCSLDLELRRKKILSIFTVCSNLWQMSSNSPTIFYYKPHF 404
           S +R   L++   +L  +L+ + I S F+ C    Q+   +PTI YY P +
Sbjct: 625 SYFREEELLSVIWTLQEKLQTRIIESYFSTCIVKEQLELRAPTI-YYTPFY 674


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 385 KIVGLFEDICHRFEQTVKIDKIFFLLNSKSKLQSHVIKS 269
           ++V +  ++     + +KID+  FL  S  KLQ +++ S
Sbjct: 50  RVVAILRELYGPGSEKLKIDQRTFLTPSSKKLQINIVSS 88


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = -1

Query: 358 CHRFEQTVKIDKI------FFLLNSKSKLQSHVIKSEWRYVEPNIIVEFSKH 221
           CH  E+ +   KI        L+N+  ++QS+++K   +   PNI +   KH
Sbjct: 28  CHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIH-QKH 78


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 127  RITLAEWGKCLQLDEYELEDR 189
            +  L+ W   L+L+EY+L +R
Sbjct: 3225 KFELSNWNNLLKLEEYKLSER 3245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,498
Number of Sequences: 5004
Number of extensions: 34861
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)