Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F24
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728           29   1.8  
01_05_0422 - 22018579-22018698,22019548-22019644,22019744-220199...    29   2.4  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    29   2.4  
09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122           29   3.1  
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53...    29   3.1  

>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
          Length = 951

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 40  ELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRCDEFIDDL*H 219
           E+  ++  L S+   +    D  D D    I + EW   ++   Y++ED  D+FI  +  
Sbjct: 34  EILTMKLELQSMNAFLLKLADMDDLD----IQVKEWRNQIRELSYDIEDCIDDFIHQMDG 89

Query: 220 GALRI 234
           G+ R+
Sbjct: 90  GSSRV 94


>01_05_0422 -
           22018579-22018698,22019548-22019644,22019744-22019908,
           22022274-22022339,22022441-22022540,22022662-22023304
          Length = 396

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 13  DNDRFVSRHELFPIRAPLMSLEHC-----IAPFLDQCDADEDHRITLAE 144
           D+D F+S HEL P+   L   E        A  + + D D D R+TL E
Sbjct: 322 DSDGFISEHELEPVLDKLHLSERYYARQQAAHAISEADKDHDGRLTLDE 370


>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 114 RIALVEERRDAVLQGHERRPDREQLVPGYK 25
           RI   EER++   +G E+ PDR + VP YK
Sbjct: 574 RIVKTEERKEGG-KGTEKEPDRIEKVPAYK 602


>09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122
          Length = 530

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 288 CSLDLELRRKKILSI--FTVCSNLWQMSSNSPTIFYYKPH 401
           C LD+ELRR   L +   TV +N W++  N   +    PH
Sbjct: 366 CVLDVELRRLTTLHVPTLTVDNNTWRVLRNLMALEQNNPH 405


>05_01_0079 +
           531617-531734,531987-532059,532152-532261,532400-532543,
           532628-532736,532836-533182,533260-533333,533478-533782,
           534168-534294,534385-534414,534589-534837
          Length = 561

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 73  LEHCIAPFLDQCDADEDHRITLA--EWGKCLQLD 168
           L H +  FL  CD+ + H   L+  EW   LQLD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,438,271
Number of Sequences: 37544
Number of extensions: 216954
Number of successful extensions: 520
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)