Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F24
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)               34   0.065
SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.085
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.085
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)               32   0.26 
SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)       31   0.46 
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)       30   1.4  
SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)                 29   2.4  
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)             27   9.8  

>SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)
          Length = 217

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 13  DNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYE 177
           D D  +   E+  I A +M  E C A FL  CD +    I+ +EW  C  L E E
Sbjct: 156 DKDNALEGAEIDNILA-MMIYEPCAAGFLWSCDLNRKQGISRSEWDMCFTLAERE 209


>SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 33.9 bits (74), Expect = 0.085
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 4   DAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 156
           DA+ ND+ +  HE   +++ +   E C+  F+D CD D    IT  EW  C
Sbjct: 7   DANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 53


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 33.9 bits (74), Expect = 0.085
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 4   DAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 156
           DA+ ND+ +  HE   +++ +   E C+  F+D CD D    IT  EW  C
Sbjct: 734 DANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 780


>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
          Length = 196

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 13  DNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 156
           + D  +S  E+  I  PL+  E CI  F+  CD +++  I   EW  C
Sbjct: 132 NRDGVLSGREINSIIGPLLFHERCIYGFVMSCDVNKNSVIDKQEWLLC 179


>SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)
          Length = 452

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 13  DNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQL 165
           D D  +   EL  ++   +  E+CI  F ++CDA +D + +L E     QL
Sbjct: 34  DGDHVLGPEELAEVKE--IPNENCITQFFEKCDATKDGQFSLLESANASQL 82


>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +1

Query: 13  DNDRFVSRHELFPIRAPLMSLE-----HCIAPFLDQCDADEDHRITLAEWGKCL 159
           + DR ++  E F +    M  +      C    L  CD D+D+ ++L EW  CL
Sbjct: 381 NRDRIINSREFFVVSMKKMLGKIKRGRKCSRKLLADCDFDKDNGLSLNEWSYCL 434


>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
          Length = 187

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 82  CIAPFLDQCDADEDHRITLAEWGKCLQLDE 171
           C   F+  CD ++D RI+  EW  C  + E
Sbjct: 85  CSKTFVGYCDENQDQRISRNEWYACFGVQE 114


>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
          Length = 649

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 146 GANV-CNSMSTSWRTAATNSSMTCSMVL 226
           G+NV CNSMS +W    TN +M+   VL
Sbjct: 249 GSNVSCNSMSGAWGKKPTNRTMSTECVL 276


>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2504

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 313  LLNSKSKLQSHVIKSEWRYVEPNIIVEFSKHHAT 212
            ++  +   +SH++   +   +P I   FS+H AT
Sbjct: 1425 IVKHEQNFRSHILPDRYLIAQPTIFTSFSRHQAT 1458


>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 901

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 334 KIDKIFFLLNSKSKLQSHVIKSEWRYVEP 248
           K+D +F ++     + +H+ K+EWR + P
Sbjct: 788 KVDSLFSVIAPGKYVATHISKNEWRKLVP 816


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,916
Number of Sequences: 59808
Number of extensions: 259064
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)