Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F24
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08580.1 68418.m01021 calcium-binding EF hand family protein ...    33   0.092
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   4.6  

>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 391

 Score = 33.5 bits (73), Expect = 0.092
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +1

Query: 1   LDAHDNDRFVSRHELFPIRAPLMSLEHCIAP-----FLDQCDADEDHRITLAE 144
           LD +D D ++S  EL PI + +   EH  A       + Q D+D+D R+TLAE
Sbjct: 311 LDKND-DGYLSDVELLPIISKIHPTEHYYAKQQADYIISQADSDKDRRLTLAE 362


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 64   LMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRC 192
            LM +        ++ + DE+ R+ L E  KCLQ      E  C
Sbjct: 1287 LMDMAQYTEDLKEKINIDEERRVELEERLKCLQAQREHAEQEC 1329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,032,436
Number of Sequences: 28952
Number of extensions: 174830
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)