Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F23
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    29   0.32 
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   1.3  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   3.0  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   3.9  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   3.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   9.1  
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    24   9.1  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    24   9.1  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    24   9.1  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.32
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 140 SKDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 247
           SK      +   YYK+ K Y  +AN D     K VE
Sbjct: 94  SKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 278 DNRFCTISRILQQLSYWCSYRCW 210
           D +  T++++ + LS W  YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 122 KGFIXFSKDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 247
           +G I F K +  ++VDD    + K  ++  + D YT ++ +E
Sbjct: 435 QGVISFRKSI--LSVDDTVANVLKSNELFRDTDQYTQRQMIE 474


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 206 EANIDNYTNKKAVEEFLKLYRIGYLPK 286
           E  + N+T ++A+EE  KL     LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 206 QRHSPFQFCSIHHQR*LGLHLWK 138
           +R    +FCSI+    +G HLW+
Sbjct: 318 ERFDLSEFCSIYDLEPVGAHLWR 340


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 75  HFKTKDVDAVFVERQKKVLSPFP 143
           HF +KDVDA F    ++ ++ FP
Sbjct: 304 HFISKDVDASFAIVSEEFVNRFP 326


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 326 LPLAFGRRWRTHSTWEDNRFCTISRILQQLSYWCSYRC 213
           LP AF  R   H + E+ R        + ++YWC Y C
Sbjct: 82  LPKAFQLRNEEHKSIEEER-------RRLMAYWCVYGC 112


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 164 VDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLY-RIGY 277
           VD E+Y+I K+   E   D+    +  E  LK+Y R+ Y
Sbjct: 609 VDREWYEIHKEAKSEIEKDSSKPTEDQESKLKVYGRVAY 647


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 224 YTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYY 358
           Y + K +  +  +  +  + +YY FS F  +  ++ I  F   YY
Sbjct: 119 YVDYKHLTSYNDVLALAIVEQYYRFSPFLLRALQKLIEKFEPEYY 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,477
Number of Sequences: 5004
Number of extensions: 26378
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)