Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F23
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    27   4.9  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    27   6.5  
07_03_0475 + 18544637-18544772,18544925-18545031,18545114-185452...    27   6.5  
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728...    26   8.6  

>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 331 SLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 215
           S FP  + E GE+ V GK+ D +       SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 356 SRTSGKEQ*PLPLAFGRRWRTHSTWED 276
           SRT G    P P    RRWR H   +D
Sbjct: 404 SRTRGARNSPPPPTSARRWRPHPPADD 430


>07_03_0475 +
           18544637-18544772,18544925-18545031,18545114-18545295,
           18545467-18545599,18545708-18545920
          Length = 256

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 224 YTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIAL 340
           Y NK  V    K+      P Y EF I+YQ+  ++ IA+
Sbjct: 147 YPNKNIV---FKITESSNFPNYLEFEIWYQQGNQDIIAV 182


>03_03_0140 +
           14771293-14771821,14772343-14772455,14772723-14772830,
           14772931-14772973,14773454-14773593,14774216-14774446
          Length = 387

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 142 GKGDKTFFWRSTNTASTSFVLK*YVFGDTTLDCTRAMSPART 17
           G GD TFF    +++ + FVL    F +  L   R M P R+
Sbjct: 306 GDGDFTFFGLKQSSSLSDFVLAGEQFCNKDLSTLRKMYPNRS 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,060,381
Number of Sequences: 37544
Number of extensions: 163802
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)