Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F23
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    31   0.27 
U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation r...    31   0.27 
AF082010-1|AAD03022.1|  449|Caenorhabditis elegans UDP-N-acetylg...    31   0.27 
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    28   1.9  
U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    28   1.9  
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    28   1.9  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    28   1.9  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   1.9  
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    27   5.9  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    27   5.9  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z70307-13|CAA94339.1|  354|Caenorhabditis elegans Hypothetical p...    26   7.8  
U80840-11|AAB37935.3|  392|Caenorhabditis elegans Hypothetical p...    26   7.8  
AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical ...    26   7.8  
AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical ...    26   7.8  

>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
 Frame = +2

Query: 62   TENVSLQDKRCRRSVCGAPEKGFIXFSKDVDQVNVDDEYYKIGKD-----YDVEANIDNY 226
            T  +S ++ R  +  CG   K       +VD   + DE Y++ K      Y  E +  N 
Sbjct: 1210 TNKMSEEEYRAYKKRCGKERKTPKPDCDEVDVNKLSDEEYRLYKKRCMSTYTPEDDCSNI 1269

Query: 227  TNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALF 343
              K   E+   +Y+I  LPK  E     +K  E +  +F
Sbjct: 1270 RVKDLTEKEYNIYKIWDLPKLTEIFKNLKKKLEHSNPMF 1308


>U23516-5|AAG38885.1|  449|Caenorhabditis elegans Glycosylation
           related protein 13 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 137 FSKDVDQVNVDDEYYKIGK---DYDVEANIDNYTNKKAVEEFLKL 262
           FSK + ++ V+D+Y   GK   DY + AN    TN + ++E ++L
Sbjct: 317 FSKHLAKIKVNDKYINFGKIDLDYLLPANFAKKTNLEVMKEAVEL 361


>AF082010-1|AAD03022.1|  449|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 137 FSKDVDQVNVDDEYYKIGK---DYDVEANIDNYTNKKAVEEFLKL 262
           FSK + ++ V+D+Y   GK   DY + AN    TN + ++E ++L
Sbjct: 317 FSKHLAKIKVNDKYINFGKIDLDYLLPANFAKKTNLEVMKEAVEL 361


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 302 WRTHSTWEDN-RFCTISRILQQLSYWCSYRC 213
           WRT +  E + +F  +SRIL+Q + W S  C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572


>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +2

Query: 170 DEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHL 349
           D YY + + + V      +TN   V+E +K Y     P + ++S       EEAIA FH 
Sbjct: 65  DTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHK 112

Query: 350 FYYAKD 367
           +Y  K+
Sbjct: 113 YYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +2

Query: 170 DEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQKLREEAIALFHL 349
           D YY + + + V      +TN   V+E +K Y     P + ++S       EEAIA FH 
Sbjct: 65  DTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHK 112

Query: 350 FYYAKD 367
           +Y  K+
Sbjct: 113 YYEGKE 118


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 104 VCGAPEKGFIXFSKDVDQVNVDDEYYKIGKDYDVEANIDNYTN--KKA 241
           V   P+  +   +  VD     D + + G+D  +E +I N+TN  KKA
Sbjct: 516 VANTPDLSYFNIAPAVDLSLFIDPFVQSGRDLSIERSIRNFTNTLKKA 563


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +2

Query: 146  DVDQVNVDDEYYKIGKDYDVEANIDNY----TNKKAVEEFLKLYR--IGYLPKY 289
            DV ++++DD+Y+ +G  +D +   D        + AV  F  L+R    +LP Y
Sbjct: 2546 DVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
          protein F40G9.12 protein.
          Length = 230

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 20 SSGAHCPRAIQCGVT 64
          +SG HCPR + CG T
Sbjct: 28 TSGDHCPRVLSCGHT 42


>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
            protein R11A8.7b protein.
          Length = 2584

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 212  NIDNYTNKKAVEEFLKLYR 268
            ++DN T+K+  E++LKL+R
Sbjct: 1118 SVDNLTDKRIKEDYLKLFR 1136


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
            protein R11A8.7a protein.
          Length = 2606

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 212  NIDNYTNKKAVEEFLKLYR 268
            ++DN T+K+  E++LKL+R
Sbjct: 1118 SVDNLTDKRIKEDYLKLFR 1136


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
            R11A8.7b protein.
          Length = 2584

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 212  NIDNYTNKKAVEEFLKLYR 268
            ++DN T+K+  E++LKL+R
Sbjct: 1118 SVDNLTDKRIKEDYLKLFR 1136


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
            R11A8.7a protein.
          Length = 2606

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 212  NIDNYTNKKAVEEFLKLYR 268
            ++DN T+K+  E++LKL+R
Sbjct: 1118 SVDNLTDKRIKEDYLKLFR 1136


>Z70307-13|CAA94339.1|  354|Caenorhabditis elegans Hypothetical
           protein C39E9.13 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 85  QKMSTQCLWSARKRFYXLFQRCRP 156
           QK S+  L   R+R Y L  RC P
Sbjct: 267 QKQSSDMLLKVRERLYELLSRCIP 290


>U80840-11|AAB37935.3|  392|Caenorhabditis elegans Hypothetical
           protein F08D12.12 protein.
          Length = 392

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 152 DQVNVDDEYYKIGKDYDVEANIDNYTNK 235
           D+V+ DD +   GKD + EA  DN  NK
Sbjct: 301 DEVSGDDWWTPCGKDDEEEAINDNQLNK 328


>AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical
           protein W03F8.2 protein.
          Length = 448

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 266 RIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKDFET 376
           +I  +P+  +FSI  +KLRE     +H F+  +D +T
Sbjct: 158 KISIVPEKEDFSILEKKLRE--FNFYHGFFPREDLQT 192


>AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical
           protein T06D4.4 protein.
          Length = 684

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 24  AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSPF 140
           +GL+  +QS ++   +  F  K++DA+  +  K+ L+ +
Sbjct: 297 SGLVRRIQSGILITNSSSFFGKNLDAIIQQTHKRTLANY 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,951,402
Number of Sequences: 27780
Number of extensions: 148764
Number of successful extensions: 472
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)