Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F23
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65800.1 68414.m07467 S-receptor protein kinase, putative sim...    29   0.78 
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   1.4  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    28   2.4  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   3.1  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   3.1  
At2g24700.1 68415.m02951 transcriptional factor B3 family protei...    27   3.1  
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put...    27   5.5  
At4g09350.1 68417.m01544 DNAJ heat shock N-terminal domain-conta...    26   9.6  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    26   9.6  

>At1g65800.1 68414.m07467 S-receptor protein kinase, putative
           similar to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 847

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 104 VCGAPEKGFIXFSKDVDQVNVDDEYYKIGKDYDV--EANIDNYTNKKAVEEFLKLYRIGY 277
           + G   KGF   ++D++ +     ++K GK+ ++    NID  +++    E L+  +IG 
Sbjct: 719 ISGKRNKGFYNSNRDLNLLGFVWRHWKEGKELEIVDPINIDALSSEFPTHEILRCIQIGL 778

Query: 278 L 280
           L
Sbjct: 779 L 779


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 161 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 271
           N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 149 VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFSIFYQ 313
           +DQ+   D+  K+G  Y  EA IDN       ++   +          EF +F Q
Sbjct: 96  LDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHATALEFRLFRQ 150


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 295 LIVLGKITDSVQFQEFFNSFLIGVVI 218
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 295 LIVLGKITDSVQFQEFFNSFLIGVVI 218
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


>At2g24700.1 68415.m02951 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 555

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 53  CGVTENVSLQDKRCRRSVCGAPEKGFIX-FSKDVDQVNVDDEYYKIGKDYDVEANIDNYT 229
           CG TENVS + K  +R    AP+      F   V   N+  +   I K++ +   + N  
Sbjct: 123 CG-TENVSSKKKSLKREAESAPDNSLDSCFVATVTGSNLKRDTLYIPKEFALSNGLMNKY 181

Query: 230 NKKAVEEFLKLYRIGYLPKYYEFSIFYQK 316
               + E  + ++I    + Y +  FY +
Sbjct: 182 QIVLMNEEGESWKIDLRREAYNYGRFYMR 210


>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to phosphoglycerate
           dehydrogenase, Arabidopsis thaliana, SP:O04130
          Length = 603

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 361 SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 215
           +I  Q+    S F   L E GE+ V GK+ D V       SF + V ++
Sbjct: 480 TITVQLSNVESKFASSLSESGEVKVEGKVKDGVPHLTKVGSFEVDVTLE 528


>At4g09350.1 68417.m01544 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q45552 Chaperone
           protein dnaJ {Bacillus stearothermophilus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 249

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +2

Query: 128 FIXFSKDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPKYYEFSIF 307
           F+  S D D   +   Y ++ K+Y  +    +   K A E+F+KL  +  +    E   F
Sbjct: 110 FLGVSTDADLEEIKSAYRRLSKEYHPDTT--SLPLKTASEKFMKLREVYNVLSDEETRRF 167

Query: 308 YQKLREEAIA 337
           Y     + +A
Sbjct: 168 YDWTLAQEVA 177


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
           to SP|P35207 Antiviral protein SKI2 {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 1347

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 139 KGDKTFFWRSTNTASTSFVLK*YVFGDTTLDCTRAMSPARTRTV 8
           KG+  F    T+   T  V+  Y F   T  CTRA+  A  +T+
Sbjct: 365 KGESVFVAAHTSAGKT--VVAEYAFALATKHCTRAVYTAPIKTI 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,484,028
Number of Sequences: 28952
Number of extensions: 135847
Number of successful extensions: 380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)