Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_F22
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 27 2.7
04_01_0308 + 4188726-4190351 27 2.7
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 27 3.6
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467... 27 3.6
08_01_0796 - 7696339-7696457,7696749-7696795,7696813-7697084 27 4.7
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 27 4.7
03_05_0883 + 28483429-28484385,28485090-28485398 27 4.7
03_05_0324 - 23121401-23121465,23121507-23122059 27 4.7
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230... 26 6.2
04_01_0242 + 3152138-3152168,3153293-3153813 26 6.2
01_03_0105 + 12604125-12604583 26 6.2
04_03_0564 + 17198094-17198441 26 8.3
01_05_0423 + 22032940-22033695 26 8.3
01_05_0168 - 18865821-18866843 26 8.3
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 157 GLLSQCGFSSTSNTTETRNKNIPH 228
GLLSQCG + ++ + K +PH
Sbjct: 475 GLLSQCGHAKSTGERDPTEKVVPH 498
>04_01_0308 + 4188726-4190351
Length = 541
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 27 LRTNRQILKNVLQQRNMSVIATPARNKISKAEVVVLGSLMVV 152
++TN+ +++ + V AT +N +S+AE+ L ++ V
Sbjct: 189 IQTNKDLVEGETNELQPEVFATEEKNSLSEAEIKCLKQILEV 230
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 45 ILKNVLQQRNMSVIATPARNKISKAEVVVLGSLMVVGWSAVPVWVLVNI 191
+++ VL++RN+ A+ + K AE+++L ++ G A+ V V+I
Sbjct: 514 LVEGVLEKRNLVYCASTSAGKSFVAEILMLRRILFSGKMAILVLPYVSI 562
>01_06_0246 +
27845898-27846001,27846235-27846237,27846472-27846700,
27846814-27846968,27847091-27847136,27847233-27847324,
27847425-27847521,27847649-27847705,27847799-27847927
Length = 303
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 171 LGQQTSPPPSNCPTQPLLLL 112
+G +TS S+CP+QPLL+L
Sbjct: 259 VGVRTSHTNSSCPSQPLLVL 278
>08_01_0796 - 7696339-7696457,7696749-7696795,7696813-7697084
Length = 145
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +3
Query: 6 MLGVQSLLRTNRQILKNVLQQRNMSVIATPARNKISKAEVVVLGSLMVVGWSAV 167
++G +L R R+++ + Q + + + A + AE V +GSL V W+++
Sbjct: 83 VIGSSTLHRLKRKVIAVIFQYLSFGLDGSGATDLF--AEFVAIGSLFVFFWASI 134
>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 143 DGGGLVCCPSVGSRQHQT 196
DGG L+CC + S HQT
Sbjct: 1033 DGGELLCCDNCPSTYHQT 1050
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 17 PEPPQNQPTDPKECAPTEKHERYRY 91
P PP+ P P AP H RYR+
Sbjct: 397 PPPPRALPPVPMMLAPRGAHGRYRF 421
>03_05_0324 - 23121401-23121465,23121507-23122059
Length = 205
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 26 PQNQPTDPKECAPTEKHERYRYT 94
P+ P K C P +KHE R T
Sbjct: 122 PEKDPNAAKSCPPDKKHEPTRIT 144
>11_04_0255 -
15422536-15422640,15422734-15422790,15422917-15423013,
15423155-15423222,15423299-15423344,15423467-15423621,
15423767-15423995,15424124-15424200,15425804-15425856,
15426082-15426139
Length = 314
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 171 LGQQTSPPPSNCPTQPLLLL 112
+G +TS S CP+QPLL+L
Sbjct: 278 VGVRTSHNNSGCPSQPLLVL 297
>04_01_0242 + 3152138-3152168,3153293-3153813
Length = 183
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 152 HHHQTAQHNHFCF*NLISSGCSDNAHVSLLEHI 54
+HH A NHF N I +G H L +
Sbjct: 60 YHHLAAATNHFSMDNKIGAGAFGEVHKGFLTQL 92
>01_03_0105 + 12604125-12604583
Length = 152
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 116 SRSGCVGQFDGGGLVCCP--SVGSRQHQTLQRQ 208
SR VG + GGG C P +V S QH+ Q
Sbjct: 39 SRCVAVGAYGGGGAGCAPCFAVFSHQHKLFYSQ 71
>04_03_0564 + 17198094-17198441
Length = 115
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 119 RSGCVGQFDGGGLVCCPSVGSR-QHQTLQRQG 211
RSG +G GGG +C P S HQ R+G
Sbjct: 58 RSGGLGGRGGGGRICIPEARSAGGHQLGGREG 89
>01_05_0423 + 22032940-22033695
Length = 251
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 17 PEPPQNQPTDPKECAPTEKHERYRYT 94
P PP P P+ CA KH+R R T
Sbjct: 28 PPPPPPPPPHPQACAAC-KHQRRRCT 52
>01_05_0168 - 18865821-18866843
Length = 340
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 135 GSLMVVGWSAVPVWVL-VNIKHYRDK 209
G + + GW+ VP W L + + HY K
Sbjct: 160 GGITMKGWAVVPRWKLRLRVSHYLRK 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,919,952
Number of Sequences: 37544
Number of extensions: 167443
Number of successful extensions: 539
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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