Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F22
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-relate...    27   2.3  
At4g10640.1 68417.m01738 calmodulin-binding family protein conta...    27   4.0  
At2g38500.1 68415.m04730 expressed protein                             27   4.0  
At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1) ident...    26   5.3  
At2g37710.1 68415.m04624 lectin protein kinase, putative similar...    26   5.3  
At5g66810.1 68418.m08423 expressed protein similar to unknown pr...    25   9.3  
At5g28650.1 68418.m03508 WRKY family transcription factor DNA-bi...    25   9.3  
At5g22550.2 68418.m02633 expressed protein contains Pfam profile...    25   9.3  
At5g22550.1 68418.m02632 expressed protein contains Pfam profile...    25   9.3  
At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) simil...    25   9.3  
At2g32610.1 68415.m03981 cellulose synthase family protein simil...    25   9.3  
At1g05380.1 68414.m00546 PHD finger transcription factor, putative     25   9.3  

>At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-related
           similar to cyclopropane synthase [Sterculia foetida]
           GI:21069167
          Length = 305

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 68  EKHERYRYTR*K*DFKSRSGCVGQFDGGGLVCCPSVGSRQH 190
           EK  R+ +TR    F S +GCV  F+GG +V      SR H
Sbjct: 17  EKAARFFFTRFLTHFIS-TGCVTIFEGGNMVTFEGKDSRCH 56


>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 423

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 15  VQSLLRTNRQILKNVLQQRNMSVIATPARN 104
           +++L+R   Q+L +  QQR+  +++ P+RN
Sbjct: 148 IKALVRVQDQVLNHHQQQRSRVLLSPPSRN 177


>At2g38500.1 68415.m04730 expressed protein
          Length = 356

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 214 YSLSL*CLMLTRTHTGTADQPTTIKLPNTTTSAFEILF 101
           +S+ L C+ L  +HT  A    T  L +   +AF +LF
Sbjct: 305 FSVELKCMSLFLSHTSIATTSKTFSLTHQIFTAFLLLF 342


>At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1)
           identical to magnesium/proton exchanger AtMHX
           [Arabidopsis thaliana] gi|6492237|gb|AAF14229;
           Ca2+:Cation Antiporter (CaCA) Family member
           PMID:11500563
          Length = 539

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -2

Query: 118 AFEILFLAGVAITLMFLCWSTFFRICRLVLRRLWTPNIL 2
           A E+  ++ + + L+ L WS +  I   ++  +W+PN++
Sbjct: 158 AGELKKISDLGVWLVELVWSFWAYIWLYIILEVWSPNVI 196


>At2g37710.1 68415.m04624 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 675

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 142 KLPNTTTSAFEILFLAGVAITLMFLCWSTFFRICRLVLRR 23
           KLP          +  G+ +  +FL +S  F +C +V RR
Sbjct: 277 KLPRFEPKRISEFYKIGMPLISLFLIFSFIFLVCYIVRRR 316


>At5g66810.1 68418.m08423 expressed protein similar to unknown
           protein (gb|AAB71479.1|)
          Length = 750

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 131 HNHFCF*NLISSGCSDNAHVSLLE 60
           H  FCF   ISS  SD  H  LLE
Sbjct: 253 HKGFCFHQGISSAVSDLTHRLLLE 276


>At5g28650.1 68418.m03508 WRKY family transcription factor
           DNA-binding protein WRKY3, parsley, PIR:S72445
          Length = 330

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +2

Query: 20  EPPQNQPTDPKECAPTEKHERYRYTR*K*DFKSRSGCVGQFDGG-GLVC-CPSV--GSR 184
           +PP ++  DPK       H++  Y+R      S+SG   +FDG  G  C  PS+  GSR
Sbjct: 129 KPPSSRAVDPKPYQFIHTHQQGVYSR------SKSGLNLKFDGSIGASCYSPSISNGSR 181


>At5g22550.2 68418.m02633 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 492

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 207 CLCSV*C*REPTLGQQTSPPPSNCPTQPLL 118
           CL  + C +E T  Q +SPPP   P +P L
Sbjct: 278 CLGKISCSKEITGAQTSSPPPP--PRRPFL 305


>At5g22550.1 68418.m02632 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 443

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 207 CLCSV*C*REPTLGQQTSPPPSNCPTQPLL 118
           CL  + C +E T  Q +SPPP   P +P L
Sbjct: 229 CLGKISCSKEITGAQTSSPPPP--PRRPFL 256


>At3g51860.1 68416.m05687 cation exchanger, putative (CAX3) similar
           to high affinity calcium antiporter CAX1 [Arabidopsis
           thaliana] gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter
           (CaCA) Family member PMID:11500563; non-consensus
           AT-acceptor splice site at intron 1
          Length = 459

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 99  RNKISKAEVVVLGSLMVVGWSAVPVWVLVNIKHY 200
           +N +S  + V+LG+ + + + A+P+ +L N  +Y
Sbjct: 60  KNILSNLQEVILGTKLTLLFLAIPLAILANSYNY 93


>At2g32610.1 68415.m03981 cellulose synthase family protein similar
           to Zea mays cellulose synthase-3 [gi:9622878], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 757

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 73  FLCWSTFFRICRLVLRRLWTP 11
           F C S FF +C L+    W+P
Sbjct: 55  FFCESCFFLVCLLITCLKWSP 75


>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
          Length = 600

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 143 DGGGLVCCPSVGSRQHQ 193
           DGG L+CC    S  HQ
Sbjct: 95  DGGDLICCDGCPSTYHQ 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,932,300
Number of Sequences: 28952
Number of extensions: 131196
Number of successful extensions: 412
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)