Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F21
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   0.45 
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    24   3.2  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    22   9.7  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    22   9.7  

>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 178 KWFNSLLCNLETALNSCFSL*HCFSLP 98
           K+    LC L+ A+  CFS   CF+LP
Sbjct: 156 KYMGEDLCELQDAIRICFS---CFTLP 179


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 102 KEKQCYKEKQLFRAVSRLQSNELNH 176
           ++K CY  KQ+ +AV+ LQS  + H
Sbjct: 231 EDKCCYL-KQILQAVAYLQSQRIAH 254


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 136 NSCFSL*HCFSL 101
           +SCF+L HC SL
Sbjct: 12  DSCFNLMHCVSL 23


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 132 LFRAVSRLQSNELNHLIKLN 191
           + R VSR++SN+L  L+ ++
Sbjct: 86  IIRKVSRVKSNDLEQLLSVS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,774
Number of Sequences: 5004
Number of extensions: 7176
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)