Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F21
         (205 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative / gluta...    25   9.1  
At5g22600.1 68418.m02640 expressed protein ; expression supporte...    25   9.1  

>At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative /
           glutamyl-tRNA synthetase, putatuve / GluRS, putative
           identical to gi:3435196
          Length = 719

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 187 SLIKWFNSLLCNLETALN 134
           SL++WFNS+L      LN
Sbjct: 148 SLVRWFNSILDEYSEVLN 165


>At5g22600.1 68418.m02640 expressed protein ; expression supported
           by MPSS
          Length = 418

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 7/32 (21%), Positives = 20/32 (62%)
 Frame = -2

Query: 204 NISYSSV*LSGSIHYFVIWKLP*IAVFLCNTV 109
           N+ +  V L G +++   W++  +++++C T+
Sbjct: 65  NLQHLDVELGGCVYFREYWEVMPVSLYICETL 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,119
Number of Sequences: 28952
Number of extensions: 31858
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 12,070,560
effective HSP length: 47
effective length of database: 10,709,816
effective search space used: 214196320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)