Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F20
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.73 
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   5.2  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    26   5.2  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   5.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   5.2  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   6.8  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   9.0  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -1

Query: 235 NGEDTTFLSFPDVYASLRSFIEVLSMASPKAVLLYSWSKK*NART-LQTAITANKYNLIM 59
           N +DT+ L  PD+ +S  S  E L    P+   L+S +   N+ T  Q + T +K ++  
Sbjct: 433 NNKDTSKLENPDISSSPLSPTEDLFPNDPEEENLFSAALGLNSNTGSQPSETQSKPSIDP 492

Query: 58  LTRPRVVDNQNTIMY 14
                V DNQ+++++
Sbjct: 493 SESITVTDNQDSLLF 507


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -1

Query: 397 IVKKSGFISEKVLLRLMYGLVASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTT 218
           IVK + F  EKV ++ ++ + A + ST+    S   +  SP   L R  S++  N + +T
Sbjct: 184 IVKMTSFTGEKVQVQRLHCMNARVPSTAIGIFSHGAKQSSPLQQLGRIGSMVQINSDLST 243


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 321 DYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSE 476
           D  +A   + S SK F+E NP   T ++    G  +TL  + T  ++ ++ +
Sbjct: 141 DSLKALRQFFS-SKDFTETNPPIITSSDCEGAGEVFTLTPQETHKNKSFERD 191


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 249 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNP 344
           L+   K G+G G   + + FLGD+ Y  +  P
Sbjct: 243 LLAFDKIGSGSGDLSKCESFLGDILYMVSKEP 274


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 337 VASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTFLSFPDVYASLRS 179
           VAS   TSP  L+++ + PSP P    S + +T     T          SLRS
Sbjct: 549 VASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRS 601


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 207 KDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPD 386
           ++ N +   +  +   L  ++   E  +  +D+   +V   E+TN   +L  T   +  D
Sbjct: 367 EENNSLKQQIEQLQRELASETVVKENLKSSLDQQSANVQKLESTNR--ALESTIKTLEED 424

Query: 387 FFTMANKI 410
            +TM NKI
Sbjct: 425 VYTMKNKI 432


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
 Frame = +3

Query: 288 RVEIDKFLGDVDYS-----EATNPYISLSKTFSEMNP---DFFTMANKIYVGNKYTLDEK 443
           ++E+D    + +YS        N  I L +T  E++    DF     + YV  + +L  +
Sbjct: 295 KMEVDGLNNNSNYSATPRTRVVNGQIVLDETSLEVDRHERDFVPAEEREYV-EENSLSRR 353

Query: 444 FTSSSRQYQSEVETIDFSDTKKAADIINQWANE 542
            TS++   + + E  +  DT+K    ++QW  +
Sbjct: 354 VTSATWGNRQKPEKWNAMDTEKFYKALSQWGTD 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,710
Number of Sequences: 5004
Number of extensions: 53024
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)