Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_F20
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 46 2e-05
01_01_1152 + 9170628-9171899 42 3e-04
11_01_0750 - 6315126-6315896,6316371-6316784 36 0.027
11_02_0012 - 7346282-7347136,7347234-7347593 32 0.33
11_02_0011 - 7337618-7338496,7338596-7338991 31 0.75
05_07_0209 + 28420008-28421510 30 1.7
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 30 1.7
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984... 29 4.0
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559... 29 4.0
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548... 28 5.3
10_05_0047 + 8524345-8524414,8524687-8524776,8525004-8525306,852... 28 5.3
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 28 5.3
02_05_0622 + 30437533-30437577,30437694-30438177,30438301-304383... 28 5.3
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 27 9.3
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 27 9.3
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 46.0 bits (104), Expect = 2e-05
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 10/152 (6%)
Frame = +3
Query: 204 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDV--DYSEATNPYISLSKTFSEM 377
G DKN+ SPL + + L +GA + +I FLG A +++L +
Sbjct: 29 GGDKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDS 88
Query: 378 NP------DFFTMANKIYVGNKYTLDEKFTS-SSRQYQSEVETIDFSD-TKKAADIINQW 533
P AN ++V L + + +Y++E + F D ++A IN+W
Sbjct: 89 GPGDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEW 148
Query: 534 ANEKTRGHIKSPISDDTIDPNAAAALFNVIFF 629
T G IK + D +D A L N ++F
Sbjct: 149 FESATAGRIKDFLPKDAVDRATPAVLGNALYF 180
>01_01_1152 + 9170628-9171899
Length = 423
Score = 42.3 bits (95), Expect = 3e-04
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Frame = +3
Query: 204 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEA-TNPYISLSKTFSEMN 380
G+ +N + SPL + L GA ++ E+ FLG +E +P L +
Sbjct: 56 GQGRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLP 115
Query: 381 PDFFTMANKIYVGNKYTLDEKFT-SSSRQYQSEVETIDF-SDTKKAADIINQWANEKTRG 554
F A ++V L +F +++ +Y + E DF + ++A + +N + ++ T G
Sbjct: 116 NTSF--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEG 173
Query: 555 HIKSPISDDTIDPNAAAALFNVIFF 629
I+ + +++D + L N + F
Sbjct: 174 LIRDVLPPNSVDSSTVVVLANAVHF 198
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 399 ANKIYVGNKYTLDEKFTS-SSRQYQSEVETIDFSDTKK-AADIINQWANEKTRGHIKSPI 572
A ++ +L +F + Y S + DF + + A D IN W + T+G + + +
Sbjct: 103 AGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLL 162
Query: 573 SDDTIDPNAAAALFNVIFF 629
TID N L + ++F
Sbjct: 163 PAGTIDQNTGLVLGSALYF 181
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 32.3 bits (70), Expect = 0.33
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 6/159 (3%)
Frame = +3
Query: 171 SMKLLKEAYTSG--KDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDV---DYSEA 335
+++L K G ++NVV SP+ + + L SGA + E+ LG D E+
Sbjct: 15 ALRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEES 74
Query: 336 TNPYISLSKTF-SEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETIDFSDTKKA 512
+ + SE + A ++ + L + ++ Q Q + S KK
Sbjct: 75 VRRAVEVGLADESESGGPRVSYACGVWHDERLALKPAYRAADFQRQPK------SSRKK- 127
Query: 513 ADIINQWANEKTRGHIKSPISDDTIDPNAAAALFNVIFF 629
IN+W ++ T I+ + D ++ A L N I+F
Sbjct: 128 ---INKWVSKATNKLIREILPDGSVHGGTALVLVNAIYF 163
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 31.1 bits (67), Expect = 0.75
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Frame = +3
Query: 210 DKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLG-----DVDYSEATNPYISLSKTFSE 374
+KN+V SP + + L +GA + E+ LG D++ S + L+ +
Sbjct: 30 NKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESAS 89
Query: 375 MNPDFFTMANKIYVGNKYTLDEK---FTSSSRQYQSEVETIDFS-DTKKAADIINQWANE 542
P +++ V + TL+ K +++ Y++ +F K++ IN+W ++
Sbjct: 90 GGP---RVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSK 146
Query: 543 KTRGHIKSPISDDTIDPNAAAALFNVIFF 629
T I + D ++ + A L N I+F
Sbjct: 147 ATNKLIPEILPDGSVHVDTALVLVNAIYF 175
>05_07_0209 + 28420008-28421510
Length = 500
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 285 SRVEIDKFLGDVDYSEATN---PYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSS 455
S +++ + L D D + A + P + + MNP FT+ + NK +L E+FT+S
Sbjct: 279 SVLQLHRLLVDQDAAAAASFPAPIDGVLDWVASMNPRVFTVVEQEADHNKSSLLERFTNS 338
Query: 456 SRQYQSEVETID 491
Y S ++++
Sbjct: 339 LFYYASMFDSLE 350
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 29.9 bits (64), Expect = 1.7
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Frame = +3
Query: 204 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY------ISLSKT 365
G +NV SPL + + + L +GAG +R ++ LG +E + + + L+
Sbjct: 32 GAGRNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADA 91
Query: 366 FSEMNPDFFTMANKIYVGNKYTLDEKFTS-SSRQYQSEVETIDF 494
P A+ ++V +L + F + +Y++E ++DF
Sbjct: 92 SGAGGPR-VAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDF 134
>08_01_0978 +
9841441-9842169,9842303-9842590,9842768-9843612,
9843941-9844223,9844303-9844416
Length = 752
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 444 FTSSSRQYQSEVETIDFSDTKKA-ADIINQWANEKTRGHIKSPISDDTID-PNAA 602
+ ++ E E + S+T++ ADI QWA R +K SD+T+ PN A
Sbjct: 182 YAGKQAEWDKEDEAVAESNTQQVLADIPVQWARNWARARVKKN-SDETLSFPNPA 235
>06_03_0813 -
24853119-24854480,24854711-24855442,24855556-24855962,
24856091-24856359,24856681-24856733,24857019-24857078,
24857309-24857363,24858080-24858155,24858225-24858801
Length = 1196
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 599 CIWIYGVIRDWRFNMSSGLLISPLINDVSCFFGIAEVNSFNL 474
CIW YG I+ + F++ + + I+ L+ +S GI V L
Sbjct: 434 CIWHYGTIKKYEFDLQNKVSINWLLG-LSPNLGIVRVRGIGL 474
>10_08_0960 -
21853010-21853282,21854078-21854449,21854555-21854862,
21854946-21855102
Length = 369
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 534 ANEKTRGHIKSPISDDTIDPNAAAA 608
A + RG KSP DD I+PNAAAA
Sbjct: 241 AAAQARGS-KSPEDDDNINPNAAAA 264
>10_05_0047 +
8524345-8524414,8524687-8524776,8525004-8525306,
8525413-8525872,8525962-8526043,8526157-8526351
Length = 399
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 318 VDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETI 488
++ E N K E N D T NK+ ++ T +EK S+ R+ + + E I
Sbjct: 331 MELKEGDNSERKREKALEEYN-DEITRINKVAAASRLTAEEKRRSAERKVREKAERI 386
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 599 CIWIYGVIRDWRFNMSSGLLISPLINDVSCFFGIAEVNSFNL 474
C+W YG + + F++ + + IS L+N + GI V L
Sbjct: 494 CVWHYGTKKKYEFDVQNKVSISWLLN-IGPSLGIVRVRGIGL 534
>02_05_0622 +
30437533-30437577,30437694-30438177,30438301-30438354,
30438565-30438789,30438891-30438943,30439591-30439714,
30439823-30440077,30440171-30440517,30440661-30441266,
30441504-30441546,30441624-30441757
Length = 789
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 599 CIWIYGVIRDWRFNMSSGLLISPLINDVSCFFGIAEVNSFNL 474
C+W YG I+ + F+ + + ++ L+N + GI V L
Sbjct: 484 CVWHYGTIKKYEFDFQNKVSVNWLLN-LGPSLGIVRVRGIGL 524
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.5 bits (58), Expect = 9.3
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Frame = +3
Query: 222 VSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYIS---LSKTFSEMNPDFF 392
V +G + S G S V D G++ P +S SK S D +
Sbjct: 509 VDIAVGCAEALACMHSNIGHKSVVHGDVKSGNILLGNNLEPKVSDFGSSKLMSVAKSDNW 568
Query: 393 T-MANKIYVGNKYTLDEKFTSSSRQYQSEVETIDFSDTKKA 512
+ MA+K Y+ Y +FT S Y V ++ KKA
Sbjct: 569 SVMADKSYIDPAYIKTGRFTEKSDVYSFGVVLLELITRKKA 609
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +3
Query: 333 ATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETIDFSD---- 500
A N + L + ++ FT +K+ G+ T ++ S + S T+ ++
Sbjct: 685 ANNGALLLRQFVQTLSGPAFTWYSKLAPGSIRTWEQMQDSFLEHFYSTQRTVGITELTQT 744
Query: 501 ----TKKAADIINQWANEKTRGHIKSPISD 578
+KAAD IN+W N H PI++
Sbjct: 745 EQRANEKAADFINRWRNLSL--HCPQPITE 772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,583,835
Number of Sequences: 37544
Number of extensions: 330280
Number of successful extensions: 875
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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