Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F20
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    45   5e-05
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    40   0.001
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    31   0.63 
At3g25140.1 68416.m03139 glycosyl transferase family 8 protein c...    29   3.4  
At4g36160.1 68417.m05146 no apical meristem (NAM) family protein...    28   4.4  
At1g76740.1 68414.m08931 expressed protein weak similarity to fi...    28   4.4  
At5g39785.2 68418.m04819 expressed protein                             28   5.9  
At5g39785.1 68418.m04818 expressed protein                             28   5.9  
At5g28970.1 68418.m03584 Ulp1 protease family protein contains P...    28   5.9  
At4g04010.1 68417.m00571 Ulp1 protease family protein contains P...    28   5.9  
At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R...    28   5.9  
At1g23110.1 68414.m02889 hypothetical protein                          27   7.8  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 8/167 (4%)
 Frame = +3

Query: 153 DAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSE 332
           + + + + K+++    +G   NVV SP+ + +L+ L  +G+   ++ EI  FL       
Sbjct: 12  NVVARLAKKVIETDVANGS--NVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDH 69

Query: 333 ATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTS-SSRQYQSEVETIDFSDTK- 506
                  ++   +E +    + A+ +++     L   F       Y++    +DF+ TK 
Sbjct: 70  LNAVLAKIADGGTERSDLCLSTAHGVWIDKSSYLKPSFKELLENSYKASCSQVDFA-TKP 128

Query: 507 -KAADIINQWANEKTRGHIKSPISDDTIDP-----NAAAALFNVIFF 629
            +  D +N WA+  T G IK  +S D  D      N+   L N ++F
Sbjct: 129 VEVIDEVNIWADVHTNGLIKQILSRDCTDTIKEIRNSTLILANAVYF 175


>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
 Frame = +3

Query: 198 TSGKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKF--LGDVDYSEAT-NPYISLSKTF 368
           T     N+V SP+ + +L+ L  +G+   ++ +I  F  L   DY  A     +S++   
Sbjct: 24  TVANGSNLVFSPMSINVLLCLIAAGSNCVTKEQILSFIMLPSSDYLNAVLAKTVSVALND 83

Query: 369 SEMNPDF-FTMANKIYVGNKYTLDEKFTSS-SRQYQSEVETIDFSDTKKAADI--INQWA 536
                D   + A  +++    +    F       Y +    +DF+ TK A  I  +N WA
Sbjct: 84  GMERSDLHLSTAYGVWIDKSLSFKPSFKDLLENSYNATCNQVDFA-TKPAEVINEVNAWA 142

Query: 537 NEKTRGHIKSPISDDTIDP--NAAAALFNVIFF 629
              T G IK  +SDD+I     +   L N ++F
Sbjct: 143 EVHTNGLIKEILSDDSIKTIRESMLILANAVYF 175


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 300 DKFLGDVDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGN 422
           D++L    Y + T P I   KT S   P+     N++Y+GN
Sbjct: 228 DRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGN 268


>At3g25140.1 68416.m03139 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 559

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +3

Query: 216 NVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFFT 395
           +VV+  + +  + +++K    +G+ VE+       DY+   + Y+ + K     N   F 
Sbjct: 281 HVVTDKMNLGAMQVMFKLKEYKGAHVEVKAV---EDYTFLNSSYVPVLKQLESANLQKFY 337

Query: 396 MANKIYVGNKYTLDEKF 446
             NK+    K T + KF
Sbjct: 338 FENKLENATKDTTNMKF 354


>At4g36160.1 68417.m05146 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 377

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 111 FYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVV--SSPLGVMMLMLLYKSGAGEG 284
           +YFF H+  +   G   ++ +M    +A  +G+DK V   S  +G+   ++ YK  A  G
Sbjct: 69  WYFFSHKDKKYPTGTRTNRATMAGFWKA--TGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 126

Query: 285 SRVE 296
            + +
Sbjct: 127 QKTD 130


>At1g76740.1 68414.m08931 expressed protein weak similarity to
            fimbriae-associated protein Fap1 (GI:3929312)
            [Streptococcus parasanguinis]; weak similarity to 1MDa_1
            protein (GI:24620455) [Caenorhabditis elegans]
          Length = 1532

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
 Frame = +3

Query: 252  MLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY-ISLSKTFSEMNPDFFTMANKIYVGNKY 428
            +LL  SG G     E     G  D  EA  P  I+  K  S + PD  T+ N +   N+ 
Sbjct: 1383 LLLNSSGGGSNVSGETSILAGTADEDEAAGPIAIAFVKAMS-LTPDELTVKNHM---NEK 1438

Query: 429  TLDEKFTSSSRQYQSEVETIDFSDTKKAADIINQWA 536
              DE+  +       E    + S+ +K    I++ A
Sbjct: 1439 AADEEMITRETTPIPEETINESSENRKEYSSIDESA 1474


>At5g39785.2 68418.m04819 expressed protein
          Length = 607

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +3

Query: 303 KFLGDVDYSEATNPYISLSKTFSEMNPDFFT-----MANKIYVGNKYTLDEKFTSSSRQY 467
           +FL + D+ E+ + ++  S+TF+  + D F          +  G     D   + S  + 
Sbjct: 135 RFLTEEDFLESDSDFVDSSQTFTSNDEDGFLSDSDFAETSLKKGQNRKSDNSGSGSDSEE 194

Query: 468 QSEVETIDFSDTKKAADIINQ 530
           + E +T  F    +  D+I Q
Sbjct: 195 EEEEDTNGFESLWEHQDLIEQ 215


>At5g39785.1 68418.m04818 expressed protein
          Length = 606

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +3

Query: 303 KFLGDVDYSEATNPYISLSKTFSEMNPDFFT-----MANKIYVGNKYTLDEKFTSSSRQY 467
           +FL + D+ E+ + ++  S+TF+  + D F          +  G     D   + S  + 
Sbjct: 135 RFLTEEDFLESDSDFVDSSQTFTSNDEDGFLSDSDFAETSLKKGQNRKSDNSGSGSDSEE 194

Query: 468 QSEVETIDFSDTKKAADIINQ 530
           + E +T  F    +  D+I Q
Sbjct: 195 EEEEDTNGFESLWEHQDLIEQ 215


>At5g28970.1 68418.m03584 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 1172

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
 Frame = +3

Query: 351 SLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETI------DFSDTKKA 512
           SL +T  E+N D  +M   +Y+ N+ TL+   +S S       E I      D  +T  A
Sbjct: 625 SLLETQPEVNIDSDSMKLHVYINNQVTLEMSASSHSVSEAQPEEKIGNDPMEDTMETPPA 684

Query: 513 ADIINQWA-------NEKTRGHIKSPISDDTIDPNAAAALF 614
           A  ++ +A         +T   I S +  D  DP  A  +F
Sbjct: 685 AHSLSGFAMFSKKKVTMETAAAIHSGVCKDNTDPMKAMVVF 725


>At4g04010.1 68417.m00571 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At2g06430,
           At2g15140, At2g04980, At2g14130, At3g44500, At2g15190,
           At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
          Length = 836

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 348 ISLSKTFSEMNPDFFTMANKIYVGNKY--TLDE---KFTSSSRQYQSE 476
           + L KT  E NP+ F   + ++VG+ +   +DE   +F  +   +QSE
Sbjct: 646 LELMKTRKESNPELFKNKSVVFVGSSFLNVIDESDMEFLDNKEGFQSE 693


>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
           (RPN1) contains an APC-complex (cyclosome) and
           proteasome component repeat ( PS50248)
          Length = 891

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 539 ISPLINDVSCFFGIAEVNSFNLALVLTGRAREFLIQSIFISDVD 408
           +SP++ND      +    S +L ++  G   E + QSI  + +D
Sbjct: 506 LSPILNDAKAPLDVIAFASLSLGMIYVGSCNEEVAQSIIFALMD 549


>At1g23110.1 68414.m02889 hypothetical protein 
          Length = 261

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 213 KNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFF 392
           K   +S +GV +   LY +     SR ++ K+L  VDY+      I LS+     NP F 
Sbjct: 120 KVYANSLIGVGIASSLYHA-----SRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFL 174

Query: 393 TMANKI 410
             A+ +
Sbjct: 175 MAASAL 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,418,059
Number of Sequences: 28952
Number of extensions: 272129
Number of successful extensions: 817
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)