Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F19
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    29   0.75 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.0  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    25   9.3  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    25   9.3  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   9.3  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   9.3  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   9.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.3  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +3

Query: 336 EYIQNPQFRAHVINLMTSLNLAVNNLNQPEVVAAM 440
           EY  + +F+ H++++M S   + + + +PE++A M
Sbjct: 465 EYRLHEEFQPHILDMMDSSTSSPSYITEPELIALM 499


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 255  AELLRRLFQTFPETKEFFK-MIRKLPDEEYIQNPQFRAHVINLMTSLNLAVNNLNQPEVV 431
            A L+R     F ETK+  + ++ K  D     NP+ R    N+  ++N  VNN+++   +
Sbjct: 1382 AILMRLKDLEFLETKDLLRHVVLKYIDHT---NPEIRKATFNVCLAVNTIVNNVDETFSI 1438

Query: 432  AAMMNK 449
               +N+
Sbjct: 1439 LGGLNE 1444


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 589 GTSIYSKLSTRRKSPDNK 642
           G+ +YS + T+ K PDNK
Sbjct: 219 GSVLYSHIKTKGKHPDNK 236


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 480 KERHFGDLKQVIVTMFIEVLHLDGDTLTAWDKTVTFWYKHIFETLNTAEE 629
           K  H  DL+  +  +   +++L GD+L    KT+T    + +E L  A+E
Sbjct: 270 KNTHPDDLQFFLSRIGTMLMNLAGDSLAYEKKTITLHNGNQWEGLQMAKE 319


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 238 FANTGAHDF*TAYISLLVSPDIGFTSSGSPPHQNWLIQLPIV 113
           +ANT      +    L+  PD+G+ +  SPP     I+ P V
Sbjct: 459 YANTVGFPIPSIEFKLVDIPDLGYYTDSSPPRGEVWIRGPAV 500


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
 Frame = -2

Query: 258 PHRWVLSSQILVPTISER--------RIFLFSSVRILDSLHPD 154
           P     S   LVP +SER        R+FL S +R+LDS+ PD
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSI-PD 236


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = +3

Query: 297 KEFFKMIR-KLPDEEYIQNPQFRAHVINLMTSLNLAVNNLNQPEVVAAMMNKLGESHKRR 473
           +E F+ +R  L D++   NP FRA V+    S N  V NL+  E+    +  L E   R+
Sbjct: 279 REKFRALRFNLVDDK---NPAFRARVLKNEISFNDLV-NLSSEEMANPDLKNLAE-EIRQ 333

Query: 474 QIKERHFGDLKQVIVTMFIEVLHLDGDTLTAWDK 575
           Q  E     +KQ ++     +  LD D LT  D+
Sbjct: 334 QSTENTV--IKQHLIAPRDRL--LDEDKLTQQDE 363


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 270  VLKAPHRWVLSSQILVPTISERRIFLFSSV 181
            +L+    W+++S + VPT+ E+   L   V
Sbjct: 2208 LLEIVRGWIMNSPVPVPTVKEKAALLLKMV 2237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,381
Number of Sequences: 5004
Number of extensions: 59519
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)