Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F19
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0356 + 18073794-18074052,18074054-18074163                       31   1.0  
03_06_0754 - 36025579-36027000                                         30   1.8  
05_06_0089 - 25458605-25458742,25459042-25459158,25459284-254593...    29   2.4  
01_01_0356 - 2814175-2815401                                           29   4.1  
08_02_0306 - 15599409-15599657,15600326-15600475,15600574-156006...    28   7.2  
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932...    28   7.2  
09_02_0445 + 9446171-9447496                                           27   9.6  
02_01_0304 + 2037718-2037939,2038169-2038384,2038862-2039329,203...    27   9.6  

>02_03_0356 + 18073794-18074052,18074054-18074163
          Length = 122

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 622 AVLR-VSNICLYQNVTVLSQAVSVSPSRC-STSMNIVTITCFRSPK 491
           A LR +++ C    +T LS +  VSPSRC  T      + C RS K
Sbjct: 46  ATLRSLASACSKSKLTGLSPSAGVSPSRCPPTRSTFPNLNCMRSSK 91


>03_06_0754 - 36025579-36027000
          Length = 473

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -2

Query: 300 LLFREMFETIVLKAPHRWVLSSQILVPTISERRIFLFSSVRILDSLHPDHRPTRTGLSSC 121
           L+F +  E   LK    W  +   +V +++     + + ++++     DHRPT T L   
Sbjct: 199 LIFAKKQEVKHLKQTSLWSSTFDAVVSSLARAAFTILARIKLVFGAAHDHRPTTTPLHRS 258

Query: 120 PLLSS 106
             LSS
Sbjct: 259 LTLSS 263


>05_06_0089 -
           25458605-25458742,25459042-25459158,25459284-25459371,
           25459638-25459732
          Length = 145

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/113 (19%), Positives = 46/113 (40%)
 Frame = +3

Query: 180 GLTRREIYAVQKSWAPVFANSIPNGAELLRRLFQTFPETKEFFKMIRKLPDEEYIQNPQF 359
           G +  +   V +SW  +  +S     +   R+F+  P  K+ F  +R   D+  ++N   
Sbjct: 2   GFSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLEN--- 58

Query: 360 RAHVINLMTSLNLAVNNLNQPEVVAAMMNKLGESHKRRQIKERHFGDLKQVIV 518
                   T L          +V  A + +LG +H +  + + +F  +K  ++
Sbjct: 59  HPKACESATQL----RKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALL 107


>01_01_0356 - 2814175-2815401
          Length = 408

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 469 RLCDSPSLFIIAATTSGWLRLFTAR 395
           R+    SLF++AAT   WLR FT R
Sbjct: 22  RVASVKSLFMLAATCRRWLRRFTDR 46


>08_02_0306 -
           15599409-15599657,15600326-15600475,15600574-15600663,
           15600776-15601126,15601389-15601430,15601523-15601600
          Length = 319

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 452 EFVHHRCHNLGLVKIVHCEIQGSH*VDDVRSKLRILYVF 336
           E + H CHNL  + +V C + G   +  V S LR + +F
Sbjct: 115 EVMLHSCHNLQWLSLVRCYLDGK--LHLVLSHLRYIKIF 151


>06_03_1085 +
           27491735-27492754,27492854-27492978,27493088-27493232,
           27493328-27493591
          Length = 517

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 519 TMFIEVLHLDGDTLTAWDKTVTFWYKHIFETLNTAEE 629
           T  IE+   +GDT   WD TV  W  +  E    +EE
Sbjct: 421 TETIEIEATEGDTTLTWDLTVLGWEVNYKEEFVPSEE 457


>09_02_0445 + 9446171-9447496
          Length = 441

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -1

Query: 487 LSLICLRLCDSPSLFIIAATTSGWLRL-----FTARFREV 383
           L L+ LRL DS +L   AA    W RL     F ARFR +
Sbjct: 39  LELVLLRLGDSLALLRAAAACKRWRRLVADAGFLARFRSL 78


>02_01_0304 +
           2037718-2037939,2038169-2038384,2038862-2039329,
           2039419-2040171
          Length = 552

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 239 LNTQRCGAFKTIVSNISRNKRILQDDPQTA*RRIHTESSV*SARHQLNDFPESRS-EQS* 415
           LN   C   K+ V+ ++  K+    D +   R+   ESS+   RH+ +DF E+R+ +QS 
Sbjct: 279 LNIVTCKP-KSSVAQLNSEKQAADKDSRFRKRQQFEESSL-QKRHKSSDFSETRNRKQSF 336

Query: 416 PTRGCGSDDEQ 448
           P       +EQ
Sbjct: 337 PAISGAIQNEQ 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,948,044
Number of Sequences: 37544
Number of extensions: 372110
Number of successful extensions: 981
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)