Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F19
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)               51   9e-07
SB_25948| Best HMM Match : Globin (HMM E-Value=1.5e-18)                35   0.049
SB_1785| Best HMM Match : DPPIV_N (HMM E-Value=0.00044)                30   1.4  
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)               30   1.8  
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.2  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           28   7.4  
SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)                28   7.4  
SB_2866| Best HMM Match : RasGEF (HMM E-Value=1.3e-26)                 28   7.4  
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               27   9.8  
SB_56314| Best HMM Match : DUF454 (HMM E-Value=4.3)                    27   9.8  
SB_32924| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 31/109 (28%), Positives = 52/109 (47%)
 Frame = +3

Query: 183 LTRREIYAVQKSWAPVFANSIPNGAELLRRLFQTFPETKEFFKMIRKLPDEEYIQNPQFR 362
           LT R+I  +Q SW  V       G +L  RLF+  P  ++ F      P      +P  +
Sbjct: 168 LTERQIQLIQDSWTLVENQKQEAGIKLFTRLFKIAPYIRDLF------PFGYDPASPGLK 221

Query: 363 AHVINLMTSLNLAVNNLNQPEVVAAMMNKLGESHKRRQIKERHFGDLKQ 509
            H + +M ++ +AV  L+  E +A  + +LG+ HKR  +  + F  L +
Sbjct: 222 THALGVMDTVEVAVRGLDDQESLALKLVELGQFHKRFGLTNQEFESLSR 270


>SB_25948| Best HMM Match : Globin (HMM E-Value=1.5e-18)
          Length = 223

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +3

Query: 285 FPETKEFFKMIRKLPDEEYIQNPQFRAHVINLMTSLNLAVNNLNQPEVVAAMMNKLGESH 464
           FPE +E+  +      EE  ++   + H   +M  +  AVN+L     +   + +LG  H
Sbjct: 113 FPEFREYSTL------EELKESRSLQGHTKRVMKVVENAVNSLEDGHALMEYLQELGRRH 166

Query: 465 KRRQIKE--RHFGDLKQVIVTMFIEVL 539
           K RQIK    +  ++ Q I   F E L
Sbjct: 167 KTRQIKPTVSNLQEISQAINETFEENL 193


>SB_1785| Best HMM Match : DPPIV_N (HMM E-Value=0.00044)
          Length = 307

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 297 KEFFKMIRKL--PDEEYIQNPQFRAHVINLMTSLNLAVNNLNQP-EVVAAMMNK 449
           K+ +  ++KL  P   Y  NPQ +A ++NL    N+ +N ++ P E+   M N+
Sbjct: 190 KDAYTEVKKLAYPKPGY-NNPQVKAMLVNLTALPNVTINEISPPSELETVMQNR 242


>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
          Length = 667

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 577 VLSQAVSVSPSRCSTSMNIVTITCFRSPKCLSLICLRLCD 458
           +LSQ  S +        N  ++TCFR+    SL+CL+L +
Sbjct: 48  ILSQIRSTTRKTSKIISNSGSLTCFRARTSASLLCLKLLE 87


>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 276  FQTFPETKEFFKMIRKLPDEEYIQNPQFRAHVINLMTSLNLAVNNLNQPEVVAAMMNK 449
            F   P++   ++   +LP E+Y+Q+       I+ +TS   AV   + P V  + +++
Sbjct: 920  FTQLPQSAFHYQPWEQLPSEDYLQSQYATPETIHGVTSYGAAVTPTSLPYVTPSYLDR 977


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 408 NLNQPEVVAAMMNKLGESHKRRQIKE-RHFGDLKQVIVTMFIEVLHLDGDTLTAWDKTVT 584
           +L+Q E V+     +G  H   +I     + D ++  + + ++V   +GD LTA D T+ 
Sbjct: 32  SLDQGEYVSYSPTDVGRRHIEWRIDPLNQYFDPQRAHIRLVVKVTKANGDDLTAGDDTIG 91

Query: 585 F 587
           F
Sbjct: 92  F 92


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 9   PGGSLDILIFIYLSSVFILLTAIVVLKRVKTGQKITMG 122
           P  S DI++     ++FILL+A  VLK  K+ QK+ +G
Sbjct: 166 PLSSKDIVVVALGGALFILLSA-AVLKAAKSTQKLFVG 202


>SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
          Length = 119

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -1

Query: 643 SCYLDSSAVLRVSNICLYQNVTV----LSQA-VSVSPSRCSTSMNI-VTITCFRSPKCLS 482
           +C    SA  R    CL  +V +    LS+  V VS S   T +N+ + +TC R+  CLS
Sbjct: 47  ACICHVSACQRAFVTCLSVSVFLSRVNLSRVCVLVSVSVSVTCVNLYLPVTCLRACVCLS 106

Query: 481 LICLRLCDSPSL 446
            +C+ +  S S+
Sbjct: 107 RVCVLVSVSVSV 118


>SB_2866| Best HMM Match : RasGEF (HMM E-Value=1.3e-26)
          Length = 566

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -1

Query: 490 CLSLICLRLCDSPSLFIIAATTSGWLRLFTARFREVIKLMTCALN 356
           C+SLI +R C + S FII  T S         FR    +M C LN
Sbjct: 205 CISLILVRYCHNSSQFII-PTVSNHSLSHQLCFRFSQDVMRCILN 248


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = -1

Query: 643 SCYLDSSAV-LRVSNICLYQNVTVLSQ-----AVSVSPSRCSTSMNIVTITCFRSPKCLS 482
           S Y+    V +R +  C + +  VLS       VS+ P+RC    +   ++ +     +S
Sbjct: 222 SAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQSGVVS 281

Query: 481 LICLRLCDSPSLFIIAATTS 422
           +   R C   S  +++A TS
Sbjct: 282 IRPARCCQHTSSKVLSAYTS 301


>SB_56314| Best HMM Match : DUF454 (HMM E-Value=4.3)
          Length = 174

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 18  SLDILIFIYLSSVFILLTAIVVLKRVKTGQKI 113
           S+ IL+ I ++   ++L A  ++KRVKTG K+
Sbjct: 118 SIAILVIILVA---VILAACFIVKRVKTGHKV 146


>SB_32924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/69 (17%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 384 TSLNLAVNNLNQPEVVAAMMNKLGESHKRRQIKERHFGDLKQVIVTMF----IEVLHLDG 551
           T + + +++ +QP ++  +  ++ +  ++ + K++  GD+ ++   +F     E+    G
Sbjct: 309 TVVPMPLSSSSQPRILPRLTARMDQGPRKNRDKQKQNGDVDELTADVFEEAMAEIQLFQG 368

Query: 552 DTLTAWDKT 578
              +AW+K+
Sbjct: 369 GKGSAWEKS 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,817,492
Number of Sequences: 59808
Number of extensions: 448103
Number of successful extensions: 1275
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)