Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F17
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    26   0.26 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.8  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   4.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.2  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   5.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.4  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 599 IVTRTISRVSLIVCVPADRRLPVGSPRCLSTCPL*CSP 486
           +V   ++R+ L+      R  PV  PR  + CPL C P
Sbjct: 316 LVLDKLARIVLLNFQEERRSEPVEPPRRKNNCPLHCKP 353



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 325 GVRGRRLPLLVHAIV 281
           GVRG R+P +V ++V
Sbjct: 303 GVRGTRVPGIVRSLV 317


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 257 AAHGTVTRHYRMHQQGKPTSTNPVASIYAWTRGL-VHR 367
           A    +TRHYR H   KP      +  ++    L VHR
Sbjct: 102 AVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHR 139


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 128 HRILLSPVRPYHQSAYAH 75
           H++    + PYH S Y H
Sbjct: 67  HKMASMNIVPYHMSPYGH 84


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = -2

Query: 184 RYYIGLHVTVVILTGPYESTGSFYRLCDHIINQPMLIPNL 65
           R +      V IL  PY +    YR+   + ++ +++P +
Sbjct: 226 RQFYNDDANVYILPDPYNTKFFRYRITPELYSEHLVVPEI 265


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 519 PRTSYRQSPISWNANYQTNS*YCSRNNY 602
           P+     +P+S N NY  N    +++NY
Sbjct: 79  PKIISNNNPLSNNYNYNNNYNNYNKHNY 106


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 143 RPIRIHRILLSPVRPYHQSAYAHT 72
           R ++ HR++LS   PY +     T
Sbjct: 41  RSLKAHRVVLSACSPYFRELLKST 64


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 304 PLLVHAIVPSHGAVSGFRLHRPSVRTHQY 218
           P L+H I   HG +    L++  V  H Y
Sbjct: 171 PFLIHWIWTPHGWMRRNVLNKQHVHFHDY 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,981
Number of Sequences: 438
Number of extensions: 4640
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)