Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_F17
(623 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NA... 268 2e-72
At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NA... 266 8e-72
At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NA... 258 3e-69
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 37 0.013
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 35 0.050
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 30 1.4
At3g46530.1 68416.m05051 disease resistance protein, RPP13-like ... 29 2.5
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 29 3.3
At2g15390.1 68415.m01760 xyloglucan fucosyltransferase, putative... 29 3.3
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 28 4.4
At1g44890.1 68414.m05143 expressed protein 28 4.4
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 28 5.8
At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersico... 28 5.8
At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersico... 28 5.8
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 27 7.7
>At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
NADP-isocitrate dehydrogenase GI:5764653 from [Citrus
limon]; Nicotiana tabacum SP|P50218
Length = 416
Score = 268 bits (658), Expect = 2e-72
Identities = 117/188 (62%), Positives = 150/188 (79%)
Frame = +2
Query: 2 RFKDIFEEVYQSDYKKQFDDAKIWYEHRLIDDMVAQAIKGSGGFVWACKNYDGDVQSDVV 181
RFKDIF+EVY+++++ +++ A IWYEHRLIDDMVA A+K GG+VWACKNYDGDVQSD +
Sbjct: 223 RFKDIFQEVYEANWRSKYEAAGIWYEHRLIDDMVAYAMKSEGGYVWACKNYDGDVQSDFL 282
Query: 182 AQGYGSLGMMTSVLMCPDGRTVESEAAHGTVTRHYRMHQQGKPTSTNPVASIYAWTRGLV 361
AQGYGSLGMMTSVL+CPDG+T+E+EAAHGTVTRHYR+HQ+G TSTN +ASI+AW+RGL
Sbjct: 283 AQGYGSLGMMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLA 342
Query: 362 HRAKLDGTPXXXXXXXXXXXXCVECIDSGKMTKDLVICIHGLANTKEGMYLNTEDFLQAI 541
HRAKLD C+ ++SGKMTKDL + IHG A + Y+NTE+F+ A+
Sbjct: 343 HRAKLDSNAALLSYTEKLEAACMGTVESGKMTKDLALLIHG-AKVRRDQYVNTEEFIDAV 401
Query: 542 ADQLERKL 565
A +L+R+L
Sbjct: 402 AWELKRRL 409
>At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase SP|Q40345 from [Medicago
sativa]
Length = 410
Score = 266 bits (652), Expect = 8e-72
Identities = 117/189 (61%), Positives = 148/189 (78%)
Frame = +2
Query: 2 RFKDIFEEVYQSDYKKQFDDAKIWYEHRLIDDMVAQAIKGSGGFVWACKNYDGDVQSDVV 181
RFKDIF+EVY++ +K ++D A IWYEHRLIDDMVA A+K GG+VWACKNYDGDVQSD +
Sbjct: 222 RFKDIFQEVYEASWKSKYDAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFL 281
Query: 182 AQGYGSLGMMTSVLMCPDGRTVESEAAHGTVTRHYRMHQQGKPTSTNPVASIYAWTRGLV 361
AQG+GSLG+MTSVL+CPDG+T+E+EAAHGTVTRH+R+HQ+G TSTN +ASI+AWTRGL
Sbjct: 282 AQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLA 341
Query: 362 HRAKLDGTPXXXXXXXXXXXXCVECIDSGKMTKDLVICIHGLANTKEGMYLNTEDFLQAI 541
HRAKLD CV ++SGKMTKDL + IHG + YLNTE+F+ A+
Sbjct: 342 HRAKLDDNAKLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKLSRDTYLNTEEFIDAV 400
Query: 542 ADQLERKLS 568
A +L+ +L+
Sbjct: 401 AAELKERLN 409
>At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NADP+) [Nicotiana tabacum]
GI:3021512; contains Pfam domain PF00180: dehydrogenase,
isocitrate/isopropylmalate family
Length = 485
Score = 258 bits (631), Expect = 3e-69
Identities = 112/185 (60%), Positives = 147/185 (79%)
Frame = +2
Query: 2 RFKDIFEEVYQSDYKKQFDDAKIWYEHRLIDDMVAQAIKGSGGFVWACKNYDGDVQSDVV 181
RFKDIF+EVY++++K++F++ IWYEHRLIDDMVA A+K GG+VWACKNYDGDVQSD++
Sbjct: 293 RFKDIFQEVYEANWKQKFEEHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLL 352
Query: 182 AQGYGSLGMMTSVLMCPDGRTVESEAAHGTVTRHYRMHQQGKPTSTNPVASIYAWTRGLV 361
AQG+GSLG+MTSVL+ DG+T+ESEAAHGTVTRH+R+HQ+G+ TSTN +ASI+AWTRGL
Sbjct: 353 AQGFGSLGLMTSVLLSADGKTLESEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLE 412
Query: 362 HRAKLDGTPXXXXXXXXXXXXCVECIDSGKMTKDLVICIHGLANTKEGMYLNTEDFLQAI 541
HRAKLD CV +++GKMTKDL + IHG ++LNTE+F+ A+
Sbjct: 413 HRAKLDKNEKLMDFVKKLESSCVNTVETGKMTKDLALLIHG-PKVSRDLFLNTEEFIDAV 471
Query: 542 ADQLE 556
A +L+
Sbjct: 472 ASKLK 476
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 65 KIWYEHRLIDDMVAQAIKGSGGF-VWACKNYDGDVQSDVVAQGYGSLGMMTSVLMCPDGR 241
+I+YE +ID+ +K F V N GD+ SD+ A G LG+ S+ + DG
Sbjct: 236 EIYYEKVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSMNIGEDGI 295
Query: 242 TVESEAAHGT 271
+ +EA HG+
Sbjct: 296 AL-AEAVHGS 304
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 34.7 bits (76), Expect = 0.050
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 65 KIWYEHRLIDDMVAQAIKGSGGF-VWACKNYDGDVQSDVVAQGYGSLGMMTSVLMCPDGR 241
+I YE +ID+ +K F V N GD+ SD+ A G LG+ S + DG
Sbjct: 236 EITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSCNIGEDGV 295
Query: 242 TVESEAAHGT 271
+ +EA HG+
Sbjct: 296 AL-AEAVHGS 304
>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
(NR2) {Arabidopsis thaliana}
Length = 917
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 266 RERLQTPPSVRQDTSVLTSSFPANRNPALLHRTARHRRNSYRPIR--IHRILLSPVRPYH 93
+ + PSV T+ RNP+++ T +H NS P+ +H ++PV ++
Sbjct: 83 KSNAELEPSVLDPRDEYTADSWIERNPSMVRLTGKHPFNSEAPLNRLMHHGFITPVPLHY 142
Query: 92 QSAYAH 75
+ H
Sbjct: 143 VRNHGH 148
>At3g46530.1 68416.m05051 disease resistance protein, RPP13-like
(CC-NBS class), putative domain signature CC-NBS exists,
suggestive of a disease resistance protein. Closest
homolog in Col-0 to RPP13.
Length = 835
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 14 IFEEVYQSDYKKQFDDAKIWYEHRLIDDMVAQAIKGSGGFVWACKNYD 157
+ E Q D + +D +Y LID + +A++ G V +C+ +D
Sbjct: 443 VAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAVRRERGKVMSCRIHD 490
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -1
Query: 605 LIIVTRTISRVSLIVCVPADRRLPVGSPRCLS---TCPL*CSPSRECKSPN 462
LI++ + V ++ P+D+ V +P C+S TCP CSP SP+
Sbjct: 3 LIVIIIALVMVMVVASSPSDQT-NVLTPLCISECSTCPTICSPPPSKPSPS 52
>At2g15390.1 68415.m01760 xyloglucan fucosyltransferase, putative
(FUT4) identical to SP|Q9SJP2 Probable
fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4) {Arabidopsis
thaliana}; similar to SP|Q9SWH5 Galactoside
2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
thaliana}
Length = 503
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = -1
Query: 269 CRERLQTPPSVRQDTSVLTSSFPANRNPALLHRTARHRRNSYRPIRIHRILLSPVRPY-- 96
C + +TP R +LT+ F + H+T +R+ S P + L+S +R Y
Sbjct: 21 CSDESETPGRDRLIGGLLTADFDEGSCLSRYHKTFLYRKPS--PYKPSEYLVSKLRSYEM 78
Query: 95 -HQSAYAHTKSLRHQTASCNH 36
H+ TK+ + T +H
Sbjct: 79 LHKRCGPGTKAYKEATKHLSH 99
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 80 HRLIDDMVAQAIKGSGGF-VWACKNYDGDVQSDVVAQGYGSLGMMTSVLMCPDGRTVESE 256
H +D+ Q ++ F N GD+ SD + GS+GM+ S + G + E
Sbjct: 260 HMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGL-FE 318
Query: 257 AAHGT 271
HG+
Sbjct: 319 PIHGS 323
>At1g44890.1 68414.m05143 expressed protein
Length = 281
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 305 SLVGACDSAESRCRERLQTPPSVRQDTSVLTSSF 204
SL+GA +A SR R Q+P ++ D + T +F
Sbjct: 52 SLIGASSTAFSRYRSVFQSPATISSDRFISTFNF 85
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 80 HRLIDDMVAQAIKGSGGF-VWACKNYDGDVQSDVVAQGYGSLGMMTSVLMCPDGRTVESE 256
H +D+ Q I+ F N GD+ SD + GS+GM+ S + G + E
Sbjct: 264 HMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGL-FE 322
Query: 257 AAHGT 271
HG+
Sbjct: 323 PIHGS 327
>At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersicon
esculentum, PIR2:S52203
Length = 547
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -3
Query: 255 SDSTVRPSGHISTDVIIPSEP*PCA---TTSDCTSPS*FLQAHTNPPDPFIACATISSIS 85
S S +P+ S D + P P P + + F H+ PP PF C + SS S
Sbjct: 97 SRSMSQPNSFFSFDSLPPLSPSPFRDHDVSMEDRDSGVFNSNHSLPPSPFTRCNSTSSSS 156
Query: 84 L 82
L
Sbjct: 157 L 157
>At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersicon
esculentum, PIR2:S52203
Length = 553
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -3
Query: 255 SDSTVRPSGHISTDVIIPSEP*PCA---TTSDCTSPS*FLQAHTNPPDPFIACATISSIS 85
S S +P+ S D + P P P + + F H+ PP PF C + SS S
Sbjct: 97 SRSMSQPNSFFSFDSLPPLSPSPFRDHDVSMEDRDSGVFNSNHSLPPSPFTRCNSTSSSS 156
Query: 84 L 82
L
Sbjct: 157 L 157
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 80 HRLIDDMVAQAIKGSGGF-VWACKNYDGDVQSDVVAQGYGSLGMMTSVLMCPDGRTVESE 256
H +D+ Q ++ F N GD+ SD + GS+GM+ S + G + E
Sbjct: 261 HMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGL-FE 319
Query: 257 AAHGT 271
HG+
Sbjct: 320 PIHGS 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,421,722
Number of Sequences: 28952
Number of extensions: 330473
Number of successful extensions: 874
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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