Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F16
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    31   0.13 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   1.2  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   2.2  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    27   2.2  
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    27   2.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   3.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   5.0  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   5.0  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    25   8.8  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 326 QRSGSVRTILTMIGSTSLDSFTISERLWPSTRSRNGAWSVTH 451
           Q S    T    + S  + S T+S   WP+T   +GAWS T+
Sbjct: 40  QNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTY 81


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -2

Query: 312  HNVRQVSVRIGFIDQIVQLDESIL---YCRLEVVEFQPIIHFTLDEINCACSCAYH 154
            H+ R  +V +    QIV L  S +   YC L+V+    ++H  ++ +N     A H
Sbjct: 1138 HDERVTAVTVIRCTQIVALSSSCVMAGYCDLDVLRRLRVLHGRMEPVNYGAQMATH 1193


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 172 CTVDFVK-GKMDNWLKFNHFKSTIKDALIKLNDLVDESD 285
           CT  FV      N LKF H  ST+ D  +  +D VD  D
Sbjct: 597 CTERFVLFTTTKNLLKFVHLVSTVDDLQVVEDDAVDRHD 635


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 113 IHRVITERFQRFVLVFLLWSE*KRRVHNGHRGFWF 9
           IH++I++R Q+F   FL W E  + V+  + G +F
Sbjct: 35  IHQLISQRNQKFQANFLEW-ENSKLVYRRYAGLYF 68


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 94  SVITRWMKTIRSRCESVKPIMICTR 168
           +VIT+W+  + S C  VK +++  +
Sbjct: 102 NVITKWLPEVSSNCPGVKLVLVALK 126


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 118 TIRSRCESVKPIMICTRTCTVDFVKGKMDNW 210
           T+RS C+ +  ++  + TCTV+   G + N+
Sbjct: 477 TLRSLCKDINDLIRLSGTCTVEDPNGDLYNF 507


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 411  GHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVS 292
            G++LSE +N  N +   + ++   DP+R    +H  +  S
Sbjct: 936  GNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYS 975


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 435 APLRLLVEGHNLSEIVNESNEVEPIIVRMVLTDPLRCL--ESVHNV 304
           A LR  V     S ++NE+NE + I+  ++L+  LR L  E+  N+
Sbjct: 666 ARLRRSVSNKEDSSLINEANEEKEIVTNLLLS-ALRALISENAENI 710


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 3   KIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVR 143
           KI P    SV+DP+  +   E+     +   R   VD+N P+  R R
Sbjct: 151 KITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPLFYRYR 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,850
Number of Sequences: 5004
Number of extensions: 56526
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)