Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F16
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31)               161   3e-40
SB_26203| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)            29   4.0  
SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)                    29   4.0  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   4.6  
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           28   7.0  
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    28   7.0  
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)     27   9.2  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31)
          Length = 203

 Score =  161 bits (392), Expect = 3e-40
 Identities = 69/122 (56%), Positives = 93/122 (76%)
 Frame = +1

Query: 175 TVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHP 354
           TV+FV+ K+  W   +  + T+ +A+  L+ LVDESDPDT+LPN  HAFQTAERIR DHP
Sbjct: 83  TVEFVQQKIKKWGSLSKTEMTVMEAVFMLDALVDESDPDTDLPNSAHAFQTAERIRADHP 142

Query: 355 DDDWFHLIGLIHDLGKVMAFYEEPQWCVVGDTFAVGCKWGKSIVYGDDSFKDNPDTYNPK 534
           D DWF L+GL+HD+GKV+A + +PQWCVVGDTF VGC++    V+  ++F+DNPDT  P+
Sbjct: 143 DKDWFQLVGLLHDMGKVLALWGDPQWCVVGDTFPVGCQFSNKNVF-PETFEDNPDTKVPE 201

Query: 535 YN 540
           Y+
Sbjct: 202 YS 203



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
 Frame = +3

Query: 24  VSVMDPSLLLRPEEKYE------------DKPLEAFRDYTVDENDPIKMRVRKTYYDMH 164
           + + DPS L RPEE+Y+            DK  E FR+Y ++    +   VR+TY  MH
Sbjct: 24  IVLTDPSQLHRPEEQYQEFNKKKKEISRTDKSKEEFRNYNINLQTDV---VRETYKLMH 79


>SB_26203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 107 RVITERFQRFVLVFLLWSE*KRRVHNGHR 21
           R++   F RFV  FL W + K+   +GHR
Sbjct: 56  RIVVHYFLRFVFFFLGWWKVKQNARDGHR 84


>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
          Length = 1523

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 111 PPCNHGTLPTVCPRIS 64
           PPC+ GTLP +C + S
Sbjct: 33  PPCSEGTLPEICKKTS 48


>SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)
          Length = 343

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 255 DESILYCRLEVVEFQPIIHFTLDEINCACSCAYHNRFYGLAS*SDRFHPPCNHG 94
           DE I  C+ +   F  I ++TL      CSC  +   YG AS +   +P C+ G
Sbjct: 229 DECIQRCKAKGFHFAAINNYTL------CSCGINYGRYGKASNTTDCNPRCSSG 276


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 23.8 bits (49), Expect(2) = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 487 YGDDSFKDNPDTYNPKYNTEY 549
           Y +D   +  + YN +YNTEY
Sbjct: 264 YNNDYNTEYNNEYNTEYNTEY 284



 Score = 23.8 bits (49), Expect(2) = 6.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 487 YGDDSFKDNPDTYNPKYNTEY 549
           Y  D   D    YN +YNTEY
Sbjct: 413 YNTDYNTDYNTEYNTEYNTEY 433



 Score = 23.0 bits (47), Expect(2) = 4.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 523 YNPKYNTEYGMYEPNCGLE 579
           YN +YNTEY  Y      E
Sbjct: 280 YNTEYNTEYTEYNTEYNTE 298



 Score = 22.6 bits (46), Expect(2) = 6.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 523 YNPKYNTEYGMY 558
           YN +YNTEY  Y
Sbjct: 464 YNTEYNTEYTEY 475


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 374 SLDSFTISERLWPSTRSRNGA--WSVTHSPS 460
           S +SFTI+  LWPS+   N    W++  SP+
Sbjct: 397 SNNSFTITSPLWPSSPPSNTTCNWAIESSPN 427


>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 206 LSILPLTKSTVHVRVHIIIGFTDSHLDRIVFIHRVITERFQRFVLVFLLWSE 51
           L IL L   T   RV +I+   D HLDR   +  +I       V+  +LW++
Sbjct: 226 LVILSLVLVTAE-RVLVIVFHADRHLDRCRSVGYIIESWLVAIVITVVLWTK 276


>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
          Length = 210

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 229 KSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDD 363
           +S I   L K+ + +D+   + +LP +VH     E IR   P  D
Sbjct: 155 QSQIDSTLEKVGEKMDKYAKEADLPRLVHGSCLVEWIRHSVPKGD 199


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
 Frame = +1

Query: 118 TIRSRCESVKPIMICTRTCTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTN 297
           T+   C S+  ++  ++   + F   KM  WL  ++  S  +  +  L      S    N
Sbjct: 75  TVEGNCVSLTRLLRASKLSLIQFFS-KMKKWLDMSNASSEFRKKIEHLERNFQVSTVIFN 133

Query: 298 L--PNIVHAFQT-------AERIREDHPDDDWFHLIGLIHDLGKVMAFYEEPQWCVVGDT 450
              P  +  F+        A+R R+  P     H +GL  +    + ++   Q C + D 
Sbjct: 134 KYRPIFLDLFKNPSEDTPKAQRSRKSSPLHRGSHALGLCSNSRGYLLYFYRKQPCSISDV 193

Query: 451 FA 456
           F+
Sbjct: 194 FS 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,230,402
Number of Sequences: 59808
Number of extensions: 451160
Number of successful extensions: 1555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)