Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F16
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...   180   5e-46
At2g19800.1 68415.m02313 expressed protein similar to myo-inosit...   164   5e-41
At4g26260.1 68417.m03779 expressed protein similar to myo-inosit...   159   1e-39
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit...   158   3e-39
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    31   0.81 
At4g24010.1 68417.m03450 cellulose synthase family protein simil...    29   1.9  
At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel...    29   3.3  
At5g66770.1 68418.m08416 scarecrow transcription factor family p...    28   5.7  
At5g21900.1 68418.m02539 expressed protein                             28   5.7  
At2g42955.1 68415.m05326 hypothetical protein                          28   5.7  
At2g32235.1 68415.m03939 expressed protein                             28   5.7  
At3g03040.1 68416.m00299 F-box family protein contains F-box dom...    27   7.5  
At5g12070.1 68418.m01412 self-incompatibility protein-related si...    27   10.0 

>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score =  180 bits (439), Expect = 5e-46
 Identities = 81/151 (53%), Positives = 107/151 (70%), Gaps = 3/151 (1%)
 Frame = +1

Query: 175 TVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHP 354
           TVDFV+   + + K N  + +I +    LN+ +DESDPD + P I H  QTAE IR+D+P
Sbjct: 76  TVDFVRKMREEYEKLNRTEMSIWECCELLNEFIDESDPDLDEPQIEHLLQTAEAIRKDYP 135

Query: 355 DDDWFHLIGLIHDLGKVM---AFYEEPQWCVVGDTFAVGCKWGKSIVYGDDSFKDNPDTY 525
           D+DW HL GLIHDLGKV+   +F E PQW VVGDTF VGC + +SIV+    FK+NPD  
Sbjct: 136 DEDWLHLTGLIHDLGKVLLHSSFGELPQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYD 194

Query: 526 NPKYNTEYGMYEPNCGLENXMVSWGHDEYLY 618
           NP YN++YG+Y   CGL+N ++SWGHD+Y+Y
Sbjct: 195 NPSYNSKYGIYTEGCGLDNVLMSWGHDDYMY 225


>At2g19800.1 68415.m02313 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score =  164 bits (398), Expect = 5e-41
 Identities = 77/151 (50%), Positives = 98/151 (64%), Gaps = 3/151 (1%)
 Frame = +1

Query: 175 TVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHP 354
           T DFVK     + K N  + +I +    LN++VDESDPD + P I H  QTAE IR D+P
Sbjct: 82  TYDFVKKMRKEYGKLNKMEMSIWECCELLNNVVDESDPDLDEPQIQHLLQTAEAIRRDYP 141

Query: 355 DDDWFHLIGLIHDLGKVMAFYE---EPQWCVVGDTFAVGCKWGKSIVYGDDSFKDNPDTY 525
           D+DW HL  LIHDLGKV+   E    PQW VVGDTF VGC +  + ++    FK N D  
Sbjct: 142 DEDWLHLTALIHDLGKVLLLPEFGGLPQWAVVGDTFPVGCTFDSANIH-HKYFKGNHDIN 200

Query: 526 NPKYNTEYGMYEPNCGLENXMVSWGHDEYLY 618
           NPKYNT+ G+Y   CGL+N ++SWGHD+Y+Y
Sbjct: 201 NPKYNTKNGVYTEGCGLDNVLMSWGHDDYMY 231


>At4g26260.1 68417.m03779 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score =  159 bits (387), Expect = 1e-39
 Identities = 76/151 (50%), Positives = 99/151 (65%), Gaps = 3/151 (1%)
 Frame = +1

Query: 175 TVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHP 354
           TVDFVK     + K +    +I +    LN++VDESDPD + P I H  Q+AE IR+D+P
Sbjct: 82  TVDFVKKMRAEYGKLDKMVMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYP 141

Query: 355 DDDWFHLIGLIHDLGKVMA---FYEEPQWCVVGDTFAVGCKWGKSIVYGDDSFKDNPDTY 525
           ++DW HL  LIHDLGKV+    F   PQW VVGDTF VGC + +S V+    F +NPD +
Sbjct: 142 NEDWLHLTALIHDLGKVITLPQFGGLPQWAVVGDTFPVGCAFDESNVH-HKYFVENPDFH 200

Query: 526 NPKYNTEYGMYEPNCGLENXMVSWGHDEYLY 618
           N  YNT+ G+Y   CGL N M+SWGHD+Y+Y
Sbjct: 201 NETYNTKNGIYSEGCGLNNVMMSWGHDDYMY 231


>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 314

 Score =  158 bits (383), Expect = 3e-39
 Identities = 74/151 (49%), Positives = 98/151 (64%), Gaps = 3/151 (1%)
 Frame = +1

Query: 175 TVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHP 354
           T+DFV+     + K +     I +      ++VDESDPD + P I H  Q+AE IR+D+P
Sbjct: 79  TLDFVQKMRSEYGKLDKMVMNIWECCELSKEVVDESDPDLDEPQIQHLLQSAEAIRKDYP 138

Query: 355 DDDWFHLIGLIHDLGKVMA---FYEEPQWCVVGDTFAVGCKWGKSIVYGDDSFKDNPDTY 525
           ++DW HL  LIHDLGKV+    F   PQW VVGDTF VGC + +S V+    F +NPD  
Sbjct: 139 NEDWLHLTALIHDLGKVLTLPQFGGLPQWAVVGDTFPVGCAFDESNVH-HKYFMENPDFN 197

Query: 526 NPKYNTEYGMYEPNCGLENXMVSWGHDEYLY 618
           NPKYNT+ G+Y   CGLEN ++SWGHD+Y+Y
Sbjct: 198 NPKYNTKAGIYSEGCGLENVLMSWGHDDYMY 228


>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
           identical to cDNA CIP4.1 mRNA for COP1-interacting
           protein 4.1,  GI:13160649
          Length = 976

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +1

Query: 148 PIMICTRTCTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESD 285
           P+++C   C+VD   G+M+N     + ++++ D L++  +L   S+
Sbjct: 119 PLVVCNILCSVDIESGEMNNISMGENRQTSVADRLLEEKNLTVNSE 164


>At4g24010.1 68417.m03450 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 770

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
 Frame = +1

Query: 52  SDQRRNTRTNRWKRSVITRWMKTIRSRCES-VKPIMICTRTCTVDFVKGKMDNWL-KFN- 222
           SD+  N +TN  K  V     + ++SR E  V+   + T   T D  +G  D W  KF+ 
Sbjct: 188 SDEAENLKTNILKCEVEQMMYEDMKSRVEHVVESGKVETAFITCDQFRGVFDLWTDKFSR 247

Query: 223 HFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDH 351
           H   TI   L      +D +     +PN+++  +   ++   H
Sbjct: 248 HDHPTIIQVLQNSETDMDNTRKYI-MPNLIYVSREKSKVSPHH 289


>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
           putative (CNGC8) similar to cyclic nucleotide and
           calmodulin-regulated ion channel GI:4581207 from
           (Arabidopsis thaliana)
          Length = 728

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -3

Query: 206 LSILPLTKSTVHVRVHIIIGFTDSHLDRIVFIHRVITERFQRFVLVFLLWSE*KRRVHNG 27
           L++LPL +  V   +H   G TD    +   +H VIT+   RFV    L SE K+     
Sbjct: 181 LAVLPLPQIAVWKFLHGSKG-TDVLPTKQALLHIVITQYIPRFVRFIPLTSELKKTAGAF 239

Query: 26  HRGFW 12
             G W
Sbjct: 240 AEGAW 244


>At5g66770.1 68418.m08416 scarecrow transcription factor family
           protein
          Length = 584

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 466 KWGKSIVYGDDSFKDNPDTYNPKYNTEYGMYEPN 567
           +W ++++ G DS  D PD      N +Y +Y P+
Sbjct: 115 EWMETLISGGDSVADGPDCDTWHDNPDYVIYGPD 148


>At5g21900.1 68418.m02539 expressed protein
          Length = 544

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 296 LVSGSDSSTKSFSLMRASFIVDLKWLNFNQLS 201
           LVS +D   +SF + R+S + DL   N N+++
Sbjct: 345 LVSVNDGVVRSFFMFRSSILTDLSLANCNEVT 376


>At2g42955.1 68415.m05326 hypothetical protein
          Length = 213

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 321 ESVHNVRQVSVRIGFIDQIVQLDESILYCRLEVVEFQPI 205
           +  HNVR       + DQ+V LD+ IL  +   V F+P+
Sbjct: 78  QEFHNVRSRPTHATYADQLVNLDDQILPWK---VHFRPV 113


>At2g32235.1 68415.m03939 expressed protein
          Length = 310

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 276 IDQIVQLDESILYCRLEVVEFQPIIHFTLDEINCACSCAYHNRFYG 139
           +D++VQ +E    C+ E V+   +    + EINC C   Y   F G
Sbjct: 258 VDEVVQQEEQPKECK-EGVKVNRLGEAFVVEINCPCGRNYQTLFSG 302


>At3g03040.1 68416.m00299 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 472

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 234 RLEVVEFQPIIHFTLDEINCACSCAY 157
           RLE + F+ I+H   D+   AC C +
Sbjct: 351 RLETLIFEGIVHHVTDKCGDACDCIF 376


>At5g12070.1 68418.m01412 self-incompatibility protein-related
           similar to self-incompatibility [Papaver nudicaule]
           GI:3097262, S3 self-incompatibility protein [Papaver
           rhoeas] GI:1107841
          Length = 149

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 338 SVRTILTMIGSTS---LDSFTISERLWPSTRSRNGAWSVTHSPSDVNGVNLLFTETT 499
           SV TI   +G  S   L   +  + L     + NG+WS    PS V GV L F   T
Sbjct: 35  SVVTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWSFKFRPSIVPGVTLFFCHFT 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,005,360
Number of Sequences: 28952
Number of extensions: 295953
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)