Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_F15
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754... 29 0.98
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 29 0.98
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 28 1.3
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 27 2.3
01_01_0106 + 788967-789555,790139-790162,790339-791411 27 2.3
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 27 3.0
04_04_1478 - 33882625-33883639,33883725-33883849,33883935-338841... 27 3.0
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166... 27 3.0
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 27 4.0
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 27 4.0
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 27 4.0
06_01_0035 + 358669-359007,359458-359617,359723-360582 26 5.2
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 26 5.2
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 26 6.9
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415... 26 6.9
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 26 6.9
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947... 25 9.2
01_06_1598 + 38535077-38535368,38536381-38536463,38536575-385366... 25 9.2
>08_02_1123 +
24474434-24474538,24474800-24474860,24475050-24475477,
24475915-24476231,24476991-24477216,24477302-24477547,
24477635-24477745,24478051-24478182,24478297-24478325,
24478352-24478502
Length = 601
Score = 28.7 bits (61), Expect = 0.98
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 24 LSRSSWDLSTTIMDSPS--HWKKT 89
L SSW + TT+ D PS H+KKT
Sbjct: 551 LISSSWGIDTTVTDDPSHPHFKKT 574
>03_05_0325 +
23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 28.7 bits (61), Expect = 0.98
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 282 NLFGMHSKPSDIYNGTFPSSNNFM-RSVNGKESSLKSENSFELRTILFCPGVILCVNQSS 106
NLF + SD YN SSN M V GKE S +S T+ F G + N ++
Sbjct: 507 NLFVPEGRSSDNYNNDAASSNPLMCDGVGGKELDDDSSSSKGTHTVKF-DGQLTSSNATT 565
Query: 105 S 103
S
Sbjct: 566 S 566
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 170 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEGFECM 271
F+ FKE+ PLT + L G P + +GF C+
Sbjct: 346 FNSFKENLNPLTVVHNWLGPGVCPKVVEKGFRCI 379
>01_06_0496 -
29795490-29796638,29796811-29796870,29798168-29798371,
29798739-29798984,29799375-29799464
Length = 582
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 107 LDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKL 220
+D F +T KI RNS +FS DS+P + L +L
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315
>01_01_0106 + 788967-789555,790139-790162,790339-791411
Length = 561
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 83 ENWHKFYELDWFTHKITPGQNKIV 154
+N H+ Y L+W K+ GQN ++
Sbjct: 475 DNQHEVYFLEWIYEKVFTGQNLLI 498
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 300 VPLGNINLFGMHSKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTILF 142
+P N + + ++ KP D+YN T + R V E+ L + L T LF
Sbjct: 190 IPARNADAYTINGKPGDLYNCTAANQTEVFR-VRRNETHLLRIINAALNTPLF 241
>04_04_1478 -
33882625-33883639,33883725-33883849,33883935-33884144,
33884645-33884650
Length = 451
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 6 ILPLMPLSR--SSWDLSTTIMDSPSHWKKTGINST 104
++PL+PL +S L +D PSH+ TG+++T
Sbjct: 133 LVPLIPLEDDDASDQLEGPTLDLPSHYNITGVSNT 167
>01_06_1691 -
39215192-39215283,39215341-39215413,39215874-39216615,
39216730-39217985,39218080-39218187,39218289-39218474,
39218625-39218675
Length = 835
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -3
Query: 297 PLGNINLFGMHSKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTILFCP 136
P GN F +N F S N+ + S N + S +SEN L CP
Sbjct: 263 PYGNGRAFSRQLSSIQSFNSRFGSFNSRLGSFNCRRSGPRSENMSIPPEELRCP 316
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 140 QNKIVRNSNEFSLFKEDSLPLTDLMKLL 223
QNKIV SNE L+K+D L M+ L
Sbjct: 535 QNKIVELSNEIELYKKDREDLEMQMEQL 562
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 135 GVILCVNQSSS*NLCQFSSNVMGNPLSLYLGPKKI 31
G+++ ++ + C F S ++G PL +L P+K+
Sbjct: 137 GILVVFTATAGASSCYFVSKLIGRPLISWLWPEKL 171
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 155 RNSNEFSLFKEDSLPLTDLMKLLDEGKVPLYMSEG 259
RN+ + L+ ++S+P T L++++D + + + G
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMDPSTLASFPNYG 873
>06_01_0035 + 358669-359007,359458-359617,359723-360582
Length = 452
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 258 PSDIYNGTFPSSNNFMRSVNGKESSLKSENS 166
P D YNG + NNF+ + GK+S+L S
Sbjct: 112 PKD-YNGNDVNKNNFLAVLLGKKSALTGAGS 141
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 146 KIVRNSNEFSLFKEDSLPLTDLMKLLDEGKVPLYM 250
K+ N+ DS+P +D+MKLL K+P+Y+
Sbjct: 297 KLKHGFNDPIEIARDSVPESDMMKLLAH-KIPVYL 330
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 107 LDWFTHKITPGQNKIV 154
L WF HK PGQN I+
Sbjct: 644 LVWFAHKTFPGQNWIL 659
>05_03_0394 -
13440871-13441098,13441197-13441394,13441491-13441594,
13441687-13442551,13442677-13443045,13443372-13443533,
13443838-13444056,13444138-13444656,13444742-13444819,
13446041-13446163
Length = 954
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 100 LRTGLVHAQDNSWAKQDCTQLKRIFAFQRG 189
LR G+ H + ++ +DC F FQ G
Sbjct: 148 LRFGMTHRRPSANTSEDCADADEKFGFQSG 177
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 110 DWFTHKITPGQNKIVRNSN 166
DW H +TP Q ++R+S+
Sbjct: 581 DWICHHLTPDQVAVIRDSS 599
>06_03_1162 +
28093749-28093851,28093939-28093997,28094691-28094766,
28094848-28094919,28095023-28095110,28095230-28095485,
28095583-28095698,28096064-28096127,28096252-28096354,
28096446-28096554,28097048-28097234
Length = 410
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 307 TFSTSWQHQSIWHAFKTFRHIQRNF 233
T ++SW H W FK +H++ +
Sbjct: 278 TAASSWLHIVPWGMFKLMKHVKEKY 302
>01_06_1598 +
38535077-38535368,38536381-38536463,38536575-38536643,
38537127-38537182,38537275-38537354,38537496-38537578,
38537682-38537759,38538133-38538201,38538366-38538434,
38538520-38538566,38538656-38538746,38538839-38538892
Length = 356
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 170 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEG 259
F L K D L +TD + +++ K +Y++EG
Sbjct: 304 FELVKRDGLEVTDDVSIVEYLKHSVYITEG 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,378,667
Number of Sequences: 37544
Number of extensions: 158923
Number of successful extensions: 440
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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