Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F15
         (308 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.44 
SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26)               28   1.8  
SB_57058| Best HMM Match : ROKNT (HMM E-Value=8)                       27   3.1  
SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)              27   4.1  
SB_53844| Best HMM Match : SRCR (HMM E-Value=0)                        26   5.4  
SB_35950| Best HMM Match : SRCR (HMM E-Value=0)                        26   5.4  
SB_17813| Best HMM Match : CtaG_Cox11 (HMM E-Value=3.8)                26   5.4  
SB_298| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   5.4  
SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)                    26   7.2  
SB_48179| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)                    26   7.2  
SB_33117| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.2  
SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9)             26   7.2  
SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029)             26   7.2  
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)                    26   7.2  
SB_28210| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_12589| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 44  PKYNDNGFPITLEENWHKFYELDWFTHKITPGQNKIVR-NSNEFSLFKEDSLPLTDLMKL 220
           PK      P  + E+  KFYE + +  +I PG+ + V  N N   + ++  L L +L +L
Sbjct: 160 PKKGGRALPSDVLEHIVKFYESEEYP-RICPGKKEFVSVNENNVKVHRQKQLLLVNLHEL 218

Query: 221 LDEGK 235
             E K
Sbjct: 219 YVEYK 223


>SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 83  ENWHKFYELDWFTHKITPGQNKIVRN 160
           + WHK YELD F  K +   N I+RN
Sbjct: 66  KEWHK-YELDKFMEKTSSYHNTILRN 90


>SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26)
          Length = 239

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 89  WHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKLLD 226
           W     L  F H I P +    R   EF+   ED+L L D M  LD
Sbjct: 167 WPSIINLPHF-HSIKPKRQYRRRIREEFNFLPEDALDLFDAMLTLD 211


>SB_57058| Best HMM Match : ROKNT (HMM E-Value=8)
          Length = 200

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 116 FTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKLLDEGKVP 241
           +  K T   +K   ++NE +  +E+ +PL  +  L D+  VP
Sbjct: 142 YNDKSTAHNDKRTTDNNESTAVREEKIPLPCVASLFDQTAVP 183


>SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)
          Length = 774

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = -3

Query: 288 NINLFGMHSKPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPGVILCVNQS 109
           N N    ++  S+  N +  ++NN   + N   +S  S +S   +T   CP + L    +
Sbjct: 16  NNNNSNNNNSNSNNNNNSNSNNNNNNNNNNNNNNSSSSSSSSNKKTTPLCPPITLTQTPT 75

Query: 108 SS*NLCQFSSNV 73
           S  N+    +N+
Sbjct: 76  SISNVTPTPTNI 87


>SB_53844| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 415

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 106 TGLVHAQDNSWAKQDCTQLKRI 171
           T L   Q N WA  DCT  K +
Sbjct: 202 TSLDRCQHNGWANHDCTHSKDV 223


>SB_35950| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 501

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 106 TGLVHAQDNSWAKQDCTQLKRI 171
           T L   Q N WA  DCT  K +
Sbjct: 265 TSLDRCQHNGWANHDCTHSKDV 286


>SB_17813| Best HMM Match : CtaG_Cox11 (HMM E-Value=3.8)
          Length = 239

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 252 DIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPG 133
           D++     S  ++ +++N   SS    NSF  + IL  PG
Sbjct: 58  DVFEANLKSMEDYRKAINHTFSSCNMLNSFTSKHILPMPG 97


>SB_298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 292 WQHQSIWHAFKTFRHIQR 239
           WQH S +H F T   IQR
Sbjct: 252 WQHLSAFHCFYTTEQIQR 269


>SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 560

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 18  MPLSRSSWDLSTTIMDSPSHWKK 86
           +P+S S WD    ++ S +HW++
Sbjct: 276 VPISLSLWDKCLDVLSSLTHWEE 298


>SB_48179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 4  RYCH*CRYQDLLG 42
          R+C+ CRY DL+G
Sbjct: 55 RFCYPCRYSDLIG 67


>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 688

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 18  MPLSRSSWDLSTTIMDSPSHWKK 86
           +P+S S WD    ++ S +HW++
Sbjct: 320 VPISLSLWDKCLDVLSSLTHWEE 342


>SB_33117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 4   RYCH*CRYQDLLG 42
           R+C+ CRY DL+G
Sbjct: 141 RFCYPCRYSDLIG 153


>SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 4   RYCH*CRYQDLLG 42
           R+C+ CRY DL+G
Sbjct: 193 RFCYPCRYSDLIG 205


>SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9)
          Length = 356

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 4   RYCH*CRYQDLLG 42
           R+C+ CRY DL+G
Sbjct: 213 RFCYPCRYSDLIG 225


>SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029)
          Length = 266

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +2

Query: 59  NGFPITLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKLLDEGKV 238
           NG PITL++ W    E+D            IV  S +   FK+  +P+ DL   ++E + 
Sbjct: 195 NGNPITLKDLWPSDEEID-----------AIVAASVKPEQFKQIYIPMFDL-GTIEEAES 242

Query: 239 PLY 247
           PLY
Sbjct: 243 PLY 245


>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
          Length = 1164

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 252 DIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPG 133
           D +     S  ++++++N   SS    NSF+ + IL  PG
Sbjct: 226 DEFKANLKSMEDYLKAINHTFSSCNMLNSFKSKHILPMPG 265


>SB_28210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 4   RYCH*CRYQDLLG 42
           R+C+ CRY DL+G
Sbjct: 96  RFCYPCRYSDLIG 108


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 234 FPSSNNFMRSVNGKESSLKSENSFELRTILFCPGVILCVNQSSS*NLCQFSS 79
           F +++   R V GK     S N+    T L CP   +CV Q    N    S+
Sbjct: 181 FGNTSGRSRRVRGKRVQQNSTNNLLQCTGLDCPCERICVGQGKRKNFSDCST 232


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 261 KPSDIYNGTFPSSNNFMRSVNGKESSLKSENSFELRTI 148
           KP+ + +G  PSS+N  +  NG ++   +E+S  ++ +
Sbjct: 762 KPNHVVSGNPPSSSNGTKQENGLKNVQVNESSAMIKRL 799


>SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 80  EENWHKFYELDWFTHKITPGQNKIVRNSNE 169
           + +W + ++LDW + K+  G+N  + +  E
Sbjct: 13  DRSWLRLFKLDWPSIKLVQGKNTALSDLTE 42


>SB_12589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1255

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 68  PITLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMK-LLDEG 232
           P    E+W ++ +L+   HK  P  +  +         KE    L  L+K +LDEG
Sbjct: 259 PPLRSESWLRYGQLETGWHKAYPNMDAYIEEILNSMPDKEAPTALAGLVKNILDEG 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,028,054
Number of Sequences: 59808
Number of extensions: 196817
Number of successful extensions: 647
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)