Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F14
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)                    98   4e-21
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)                  33   0.12 
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       33   0.21 
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)            31   0.86 
SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5)           29   2.6  
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)                   29   2.6  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   2.6  
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)              29   3.5  
SB_16625| Best HMM Match : Death (HMM E-Value=1.5)                     29   3.5  
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)            28   6.1  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)                28   6.1  
SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1)            27   8.0  

>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
          Length = 750

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
 Frame = +3

Query: 66  KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNP 245
           +++++ F  S L+ V+T EK  LP+ + +A EK + + F G+E F    LKH ET EKNP
Sbjct: 451 RAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNP 509

Query: 246 LPDKDVVAAEKAHQNLLE--GVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGI 419
           LPD   + AE   + L +   V  FD +++KH  T+EK  +            ++    +
Sbjct: 510 LPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSR--AEV 567

Query: 420 ESFDPTKLKHTETCEKNPLPTKDVIEQE 503
           +SFD +KLKH  T EKNPLPT   + +E
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEE 595



 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
 Frame = +3

Query: 42   LPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKH 221
            +PK   D +S++  F+ + L+ V T EK ++PS ED+  E         ++ FD + LKH
Sbjct: 597  IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKH 653

Query: 222  TETQEKNPLPDKDVVAAEKAHQNL--LEGVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXX 395
             ET EKNPLP   V+  E   + L  +  V  FD +++KH   +EKN L           
Sbjct: 654  VETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTEST 713

Query: 396  XNKFLNGIESFDPTKLKHTETCEKNPLPTKDVIEQEKS 509
              +    +++FD +KLKH +T EKNPLP    I QEK+
Sbjct: 714  ETRA--EVKTFDHSKLKHVQTEEKNPLPDAKTIAQEKA 749



 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
 Frame = +3

Query: 54   ANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDATSLKHTE 227
            A D +++++ F+ S L+ V T EK  LP+ + +  E   K+  D  E   FD T LKH  
Sbjct: 560  AIDSRAEVKSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVT 619

Query: 228  TQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKF 407
            TQEK+ +P ++ +  E+A  +  E V+ FD +++KH  T EKN L               
Sbjct: 620  TQEKSIMPSQEDIK-EEAVDSRAE-VKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVL 677

Query: 408  --LNGIESFDPTKLKHTETCEKNPLPTKDVIEQEKS 509
              ++ + SFD +KLKH E  EKNPLPTKD I  E +
Sbjct: 678  PDVSAVASFDASKLKHVEVQEKNPLPTKDDITTEST 713



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
 Frame = +3

Query: 111 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQN 290
           DT ++I  P +E    +   K     + KFDA +LKH +T+EKN LP  + +  E     
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447

Query: 291 LLE--GVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTKLKHTETCE 464
             +   V+ F+K++++H  T+EKN+L              F +G+E F   KLKH ET E
Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVETLE 506

Query: 465 KNPLPTKDVIEQE 503
           KNPLP    I  E
Sbjct: 507 KNPLPDAQNIRAE 519



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = +3

Query: 249 PDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIE-- 422
           P  +V   +   +  +  V  FD   +KH  T+EKN+L            ++F +  E  
Sbjct: 396 PGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVK 455

Query: 423 SFDPTKLKHTETCEKNPLPTKDVIEQEK 506
           SF+ +KL+H ET EKN LPTKD I  EK
Sbjct: 456 SFEKSKLQHVETKEKNTLPTKDTIADEK 483


>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
          Length = 900

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 105 DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDATSLKHTETQEKNPLPDKDVVAAEKA 281
           DV      + P+    A EKT K + DG +EK+     +  +T   + L D DV   E+ 
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDDV---EEE 397

Query: 282 HQNLLEGVEHFDKTQMK 332
             ++L+  + F  T+ K
Sbjct: 398 DDDVLDEADRFRDTKRK 414


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 21/75 (28%), Positives = 30/75 (40%)
 Frame = +3

Query: 33   LKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATS 212
            L DL +V  +LKS+ EG    CL D++     +     DV  E         I + +   
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSISEGELLK 1183

Query: 213  LKHTETQEKNPLPDK 257
             K+T   EK     K
Sbjct: 1184 FKNTLQSEKEEFEKK 1198


>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
          Length = 446

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +3

Query: 171 KSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTE 347
           KS+F      +  S+  TET+E NP    D   AE+   ++ EG      T+ K T  E
Sbjct: 276 KSVFKRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTNME 334


>SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5)
          Length = 674

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +3

Query: 105 DVDTNEKIVLPSAEDVATEK-----TQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVA 269
           D+    ++VLP+ +DV           K  + GI + D+ S+     +  + +PD   ++
Sbjct: 341 DLAQQLQVVLPNVKDVTFTPFCWKFAYKFEYTGITESDS-SMSLARVRRTSSVPDSLQLS 399

Query: 270 AEKAHQNLLEGVEHFDKTQMKHTTTE 347
           AE      +E V+H +K  +  TT +
Sbjct: 400 AELLSVGSVESVDHREKYPLNKTTAD 425


>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
          Length = 385

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 132 LPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLP 251
           L S  D   EKT     D +E+F + + +H  T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 141  AEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLL 296
            ++D   EKT+ S+ +  +  D+++     T+EK    +KD    E+  ++L+
Sbjct: 1546 SDDGTDEKTEDSMQEDAKDLDSSNTASDTTKEKGKNKEKDKTVLERWEESLM 1597


>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
          Length = 766

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
 Frame = +3

Query: 153 ATEKTQKSLFDGIEKFDATSLKHTE-----------TQEKNPLPDKDVVAAEKAHQNLLE 299
           A   T   L DG+  FD    +H +             E++P  +K   A      +LL+
Sbjct: 184 ALRDTTHDLLDGLRYFDQAKEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLD 243

Query: 300 GVEHFDKTQMKH 335
           G+ +FD+ + +H
Sbjct: 244 GLRYFDQAKEEH 255


>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
          Length = 528

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 225 ETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKH 335
           +T E++P  DK   A      +LL+G+  FD+ + +H
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEH 297



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 225 ETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKH 335
           +T E++P  +K   A      +LL+G++HF + + +H
Sbjct: 163 KTIEQDPSSEKSYQALRDTTHDLLDGLQHFGQAKEEH 199


>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -3

Query: 274  SAATTSLSGRGFFSWVSVCFKLVASNFSIPSNRDFWVFSVATSSADGRTIFSFV 113
            +AAT     +  F+   +  + VA N ++P    FW + +  S       F FV
Sbjct: 849  TAATVKSHMKSIFARHGIPEEFVADNMTVPGESTFWYYIIVNSLIAVTVFFVFV 902


>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
          Length = 692

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 225 ETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKH 335
           +T E++P  +K   A      +LL+G+ +FD+ + +H
Sbjct: 537 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQAKEEH 573


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 225 ETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKH 335
           +T E++P  +K   A      +LL+G+ +FD+   +H
Sbjct: 567 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 603


>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
          Length = 556

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 225 ETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKH 335
           +T E++P  +K   A      +LL+G+ +FD+   +H
Sbjct: 492 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 528


>SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1)
          Length = 476

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = +3

Query: 87  NTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVV 266
           +T  +RD +T   I LP+++ VA  K Q  +  G+  F  TS K        P   +D  
Sbjct: 270 DTVSIRDCETGVVIELPASQTVAPHKFQGKVQFGV-TFPGTSSKSWSRTMDFPHKQQD-K 327

Query: 267 AAEKAHQNLLEGVEHFDKTQMKHTTT 344
            A +  Q+     +H   +  + T+T
Sbjct: 328 PASRGQQDSTTTPDHVTVSVAQVTST 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,285
Number of Sequences: 59808
Number of extensions: 330219
Number of successful extensions: 1099
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)