Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F13
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   0.48 
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.84 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    28   1.1  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.9  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   5.9  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   7.8  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
 Frame = +1

Query: 340  VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDXGEGGFWVSYEDP 516
            V  L+SYP++  ++   + +    +LR++N P +  F  +A   P    E GF+V   D 
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSE-GFFVLIIDS 1873

Query: 517  DT----AGNKASYVKTKNLGGVSI-MDLSMDDFRGLCTGDNIR 630
            +T    A  +AS+   +N   + + + +SM D    C   N++
Sbjct: 1874 ETQELFAIRRASFAGRRNDDSIRLSLRISM-DIPPTCRNRNVK 1915


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 157 RGSAVRKSVQCS---PPLWGYVQVYNSQMP 77
           +G ++ KS  CS   PPL G+V V+N Q P
Sbjct: 256 KGKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +2

Query: 410 LIFVRSTILANVLGPMPSAFLMXMVKVA-SGFLTKILTRPETKLVT*KQRTLAVCPSWTF 586
           ++FV S + +     +PS+F M MV +A S  L+   T+   K+V+    T+     W F
Sbjct: 131 VLFVNSGMWSASTSFLPSSFAMNMVTLALSAQLSPPSTKRTVKVVS--FITIGAVIGWPF 188

Query: 587 PWMIFVVFALEIISDPEGR 643
              + + F L  + D +GR
Sbjct: 189 SAALSIPFILLELVDLKGR 207


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 215 PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 304
           PT L    SA  DVR +S   +   +FH+Y+
Sbjct: 51  PTELKARTSATFDVRSASTSPINASDFHKYS 81


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 133 PIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEIS 285
           P   PQ+ + +QN +  +   +  G P  K V+ +  T        DSDS++S
Sbjct: 777 PESPPQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLS 829


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 69  DNVDQVYDAWDVKVNGAIYVWQ 4
           D VD++YDAW    N     WQ
Sbjct: 54  DYVDEMYDAWKKDPNSVHASWQ 75


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +1

Query: 175 DAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPP-----IHADXGGEAGPYTK 339
           + A  YWI+    T + +LG S   + + +     IS + P      H+   G  GP TK
Sbjct: 792 EKATTYWIKGTEFTVERLLGYSNEAQRF-VGGSICISRLAPQDYHRFHSPVNGCIGPITK 850

Query: 340 VQG 348
           ++G
Sbjct: 851 IEG 853


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,087
Number of Sequences: 5004
Number of extensions: 67381
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)