Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F13
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       47   1e-05
11_04_0234 + 15187065-15188241,15188316-15188494                       44   1e-04
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507...    29   3.5  
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272...    29   4.7  
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    28   8.1  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 3/191 (1%)
 Frame = +1

Query: 34  DVPS--IINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 204
           D PS  +   +D VN+ AF    P   N     + AP+Y   +R    +A   +  W+  
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271

Query: 205 GAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEICAKLI 384
           G P  K+V+GI   GR+W L + +      P+ A    + G  +   G +SY E+   L 
Sbjct: 272 GVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV-QWLA 328

Query: 385 NPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKTKNLG 564
                G R  +   ++ S    +Y          G  WV+++       K ++     L 
Sbjct: 329 ATATRGSRAVITAYDNAS--VASYV-------SVGDVWVAFDGVAVVAEKLAFAARCGLL 379

Query: 565 GVSIMDLSMDD 597
           G  +  ++ DD
Sbjct: 380 GYFLWPVNYDD 390


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 1/195 (0%)
 Frame = +1

Query: 16  NSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW 195
           ++++ + +  + + +D VNI  F  +    N   AD  AP+Y   ++D   +A   +  W
Sbjct: 214 DTNLNYPIDDMSSSLDWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISW 267

Query: 196 IQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEIC 372
           +  G P  KLV+GI   GR+W L + D    G P   A  G +     ++ G+++Y EI 
Sbjct: 268 LDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPT--AAAGTKQRKSNQI-GVIAYAEIE 324

Query: 373 AKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLPDDXGEGGFWVSYEDPDTAGNKASYVKT 552
             L       K   +   +D ++    Y +        G  WVS++       K  +V  
Sbjct: 325 EYL-------KSQSVFVTHD-NQSVADYFY-------SGDLWVSFDSAVVVQEKVEFVAK 369

Query: 553 KNLGGVSIMDLSMDD 597
             L G  +  +S DD
Sbjct: 370 SQLLGYFLSTISFDD 384


>03_05_1021 -
           29750155-29750220,29750342-29750428,29750614-29750799,
           29750965-29751059,29751179-29751284,29751378-29751452,
           29751548-29751679,29751782-29751961,29752371-29752567,
           29752651-29752906
          Length = 459

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 223 LVLGISTTGRTWKLDSDSEISGVPPIHADXGGEAGPYTKVQGLLSYPEICAK 378
           LV+G   +  T  L    E+SG+P    D     GP  K+   L++ E+  K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416


>07_01_0365 +
           2718707-2718839,2719335-2719405,2719512-2719955,
           2720660-2721802
          Length = 596

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 158 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 268
           ++Y +PT++ + GF   +    LSLV+A L+  GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 575 MDTPPRFFVFT*LALFPAVSGSS*ETQKPPSPXSSGRRKA 456
           M T P       +A   A  GS  +T  PPSP   GRR++
Sbjct: 542 MMTVPNLGTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,409,773
Number of Sequences: 37544
Number of extensions: 461564
Number of successful extensions: 1235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)