Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_F11
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0811 + 24830496-24831194 107 4e-24
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 105 3e-23
02_01_0691 - 5167260-5167937 99 1e-21
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 86 1e-17
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 44 6e-05
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 30 1.3
11_06_0690 + 26303733-26306540 29 1.7
02_05_1055 - 33798162-33798290,33798417-33798604,33798707-337987... 29 1.7
06_01_0671 - 4899611-4899829,4900870-4901448 29 2.3
09_01_0128 + 1932721-1935181,1936099-1936256 29 3.0
01_06_0318 - 28434817-28435197,28435333-28435461 28 4.0
05_01_0529 - 4561792-4561854,4561954-4562016,4562413-4562471,456... 27 6.9
08_01_0131 + 1050028-1050459,1051599-1051701,1052338-1052393,105... 27 9.1
05_03_0021 - 7435810-7435842,7436573-7436869 27 9.1
>06_03_0811 + 24830496-24831194
Length = 232
Score = 107 bits (258), Expect = 4e-24
Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 4/115 (3%)
Frame = +2
Query: 41 RALHTSKIAMAPIKVGDMLPSLDL-FEDSPANKVNTC---EITAGKKVVLFAVPGAFTPG 208
RA+ S A A I VGD LP L + DSP ++ T ++TAGKKVVLFAVPGAFTP
Sbjct: 59 RAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPT 118
Query: 209 CSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPN 373
C++ H+PG+V A +++++GV + CVSVND +VM AW +V +L+D N
Sbjct: 119 CTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGN 173
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 105 bits (251), Expect = 3e-23
Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 3/103 (2%)
Frame = +2
Query: 68 MAPIKVGDMLPS--LDLFE-DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYV 238
MAP+ VGD LP L F+ + +V+ + AGKKVVLF VPGAFTP CS H+PG++
Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFI 60
Query: 239 QNADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLAD 367
A+++K++GV +I+ VSVNDP+VM AW + V+ LAD
Sbjct: 61 NQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLAD 103
>02_01_0691 - 5167260-5167937
Length = 225
Score = 99 bits (238), Expect = 1e-21
Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Frame = +2
Query: 41 RALHTSKIAMAPIKVGDMLPSLDLFEDSPAN----KVNTCEITAGKKVVLFAVPGAFTPG 208
R+ ++ +A I VGD LP L PA+ V E+TAG+K VLFAVPGAFTP
Sbjct: 51 RSAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPT 110
Query: 209 CSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAW 322
CS+ HLPG+++ A ++ ++GV I CVSVND +VM AW
Sbjct: 111 CSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAW 148
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 86.2 bits (204), Expect = 1e-17
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = +2
Query: 149 EITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAWGA 328
+I GKKVV+F +PGA+T CS+ H+P Y N DK+K++GV ++CVSVNDPY + W
Sbjct: 66 DIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAE 125
Query: 329 QHNTKGKVRMLADPNWRIHQS 391
+ K + D + H+S
Sbjct: 126 KLQAKDAIEFYGDFDGSFHKS 146
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 44.4 bits (100), Expect = 6e-05
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 56 SKIAMAPIKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSK--THLP 229
S +AM + +GD +P+L+L DS K+ + V+LF+ PG FTP C+ +
Sbjct: 32 SFVAMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMA 89
Query: 230 GYVQNADK--MKSEGVS 274
GY + DK +K G+S
Sbjct: 90 GYAKEFDKRGVKLLGIS 106
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 182 AVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIVCVSVNDPYVMAAW-GAQHNT 340
A+ G P C H+ + K +S+ V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>11_06_0690 + 26303733-26306540
Length = 935
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/90 (26%), Positives = 36/90 (40%)
Frame = +2
Query: 71 APIKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNAD 250
+P + G + L SP V+ CE +A + AV GAFT + P +V A
Sbjct: 524 SPARRGAAVGKESLLPSSPVAVVSQCEDSAPETQSTLAVVGAFTRPVFWSPQPVFVPAAK 583
Query: 251 KMKSEGVSEIVCVSVNDPYVMAAWGAQHNT 340
E + P + A G+QH +
Sbjct: 584 DSPPESAA---ATEPPQPLLPATVGSQHES 610
>02_05_1055 -
33798162-33798290,33798417-33798604,33798707-33798767,
33799045-33799122,33799250-33799472,33799599-33799824,
33799922-33800116,33800210-33800627,33800904-33801182
Length = 598
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -1
Query: 478 SSTLLSMITSEKRF--ERNPPNGGRFVPRSRALMNAPIWISKHSYLSLGVVLG-TPSGHN 308
+ST + + + R R PP R +PR+ + P S SY + V LG P GH
Sbjct: 5 ASTSAAAVAAASRLLVRRAPPRLLRRLPRAALAASRPSPPSSSSYGAAAVALGRQPLGHR 64
Query: 307 IRIVHRHA 284
R+ H A
Sbjct: 65 ARMGHTAA 72
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 77 IKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKM 256
+ G P+ L D V+ + G+ VV++ P TPGC+K + + +K
Sbjct: 118 VSKGSAAPNFTL-RDQDGRAVSLSKFK-GRPVVVYFYPADETPGCTK-QACAFRDSYEKF 174
Query: 257 KSEGVSEIVCVSVND 301
K G +E++ +S +D
Sbjct: 175 KKAG-AEVIGISGDD 188
>09_01_0128 + 1932721-1935181,1936099-1936256
Length = 872
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 335 CAGHPKRP*HTDRSQTRILFQKRPHFSSYQRFA 237
C+G KR H D+ QT L + H ++R+A
Sbjct: 337 CSGVDKRQKHIDQIQTNSLGMQEKHTDKFERYA 369
>01_06_0318 - 28434817-28435197,28435333-28435461
Length = 169
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 431 ESTQRWQVRSEVKSFDECANLDQQAFVPFPWCCAGHPK 318
ES Q W V EC L++ +F F W C H K
Sbjct: 128 ESQQLWWVALRAIGHSECLPLNEHSF--FSWLCDCHKK 163
>05_01_0529 -
4561792-4561854,4561954-4562016,4562413-4562471,
4562887-4563988
Length = 428
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 438 KRFSLVIIDSKVEDWTVEPDGTGWS 512
+RF ++++ E W + PD +GWS
Sbjct: 124 RRFDYLVVNPATEQWVILPD-SGWS 147
>08_01_0131 +
1050028-1050459,1051599-1051701,1052338-1052393,
1052517-1052693,1052820-1052933,1053057-1053386
Length = 403
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 26 NGVYVRALHTSKIAMAPIKVGDMLPSLDLFEDSP 127
N ++ + ++ P K+GD+LP L +D P
Sbjct: 286 NSIHANKIEGIQVLWTPQKIGDILPEERLLKDYP 319
>05_03_0021 - 7435810-7435842,7436573-7436869
Length = 109
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 461 NDYQ*ETFRTESTQRWQVRSEVKSFDECANLDQ 363
N+Y +T S Q+W E+ S DE A DQ
Sbjct: 66 NEYAQQTINLGSAQQWGGNVEIGSCDELAYWDQ 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,964
Number of Sequences: 37544
Number of extensions: 335568
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -