Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F11
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          88   4e-18
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.33 
SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)                  32   0.33 
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_46730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)                      28   5.4  

>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
 Frame = +2

Query: 68  MAPIKVGDMLPSL--DLFEDSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQ 241
           M P + G  +P +   + E +   KV+T  + AGK VVLFA+PGAFTP CS THLP Y +
Sbjct: 1   MLPNREGQKVPKVVFPVREGNDWVKVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNE 60

Query: 242 NADKMKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPN 373
            A   K++GV +I+C+SVND +VM +W A    +  +  + D N
Sbjct: 61  LAPVFKAQGVDDIICLSVNDTFVMNSWAADQKAE-NITFIPDGN 103



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 375 GAFIKALDLGTNLPPLG-GFRSKRFSLVIIDSKVEDWTVEPDGTG 506
           G F + + +  +   LG G RS R+S+++ D  +E   +EPD  G
Sbjct: 104 GEFSEGMGMLVDKSDLGFGKRSWRYSMLVKDGVIEKMFIEPDVPG 148


>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +3

Query: 387 KALDLGTNLPP-LGGFRSKRFSLVIIDSKVEDWTVEPDGTGWSCSL 521
           KA+DL  +  P LG  RSKR+++++ D  V+   VEPDGTG +CSL
Sbjct: 84  KAVDLELDATPFLGNIRSKRYAMLVEDGVVKQLHVEPDGTGLTCSL 129



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = +2

Query: 254 MKSEGVSEIVCVSVNDPYVMAAWGAQHNTKGK 349
           +KS+GV  + C++VNDP+VM+AWG  +  +GK
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAWGEANGCQGK 84


>SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 355 SYLSLGVVLGTPSGHNIRIVHRHAYYFRNALTFHLISVLHVSRQMSLRTPRSKRSRYSKQ 176
           S+L  G+ L T  G  +R+ + H       L  H + +LH+ RQM   T     S+ S  
Sbjct: 165 SFLGAGIPLNTILGLPVRLNNIHGPKASYGLQPHDVRMLHLLRQMCSGT--LVASKGSST 222

Query: 175 DNFLPGGYLASI 140
             FLPG   A I
Sbjct: 223 VTFLPGDLQAGI 234


>SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)
          Length = 565

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -1

Query: 355 SYLSLGVVLGTPSGHNIRIVHRHAYYFRNALTFHLISVLHVSRQMSLRTPRSKRSRYSKQ 176
           S+L  G+ L T  G  +R+ + H       L  H + +LH+ RQM   T     S+ S  
Sbjct: 312 SFLGAGIPLNTILGLPVRLNNIHGPKASYGLQPHDVRMLHLLRQMCSGT--LVASKGSST 369

Query: 175 DNFLPGGYLASI 140
             FLPG   A I
Sbjct: 370 VTFLPGDLQAGI 381


>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 384 IKALDLGTNLPPLGGFRSKRFSLVIIDSKVEDWT 485
           ++A+DL TN+  +G  R+  F +  +D +VED T
Sbjct: 80  VRAVDLSTNMIEIGKQRAAEFEIDKVDFEVEDIT 113


>SB_46730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 35  YVRALHTSKIAMAPIKVGDMLPSLDLFEDSPANKVNTCEITAGKKVVLFAVPGA 196
           Y   +H    ++ P+K+ D+ PS+  FE S  N   +      +++++    GA
Sbjct: 245 YFETVHNDPPSITPMKMNDLTPSVPCFE-SKTNSSQSRSYKINEEIIVNVSQGA 297


>SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)
          Length = 367

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 396 DLGTNLPPLGGFRSKRFSLVIIDSKVEDWTVEPDGTGWSCS 518
           D+GT+  PLG FR     + + D   + W  +    G+SC+
Sbjct: 52  DIGTSTNPLGKFRGHLGYVSVTDLVSQYWCEQQMEYGYSCA 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,947
Number of Sequences: 59808
Number of extensions: 383810
Number of successful extensions: 1647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)