Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F11
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    28   4.7  
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    28   4.7  
Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL023845-5|CAA19537.1|  111|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical
           protein C06C6.6 protein.
          Length = 834

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 427 PPNGGRFVPRSRALMNAPIWISKHSYLSLGVVLGTPSGHNIRIV 296
           PP   RF   ++A+ N  +++ K +   +  V+G P    IR V
Sbjct: 278 PPRQSRFAKNAKAVKNISLYVDKSNIFVMREVVGAPYSQIIRDV 321


>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +2

Query: 119 DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSE--IVCVS 292
           D+P NK+   ++T+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 293 VNDPYVMAAWGAQHNTKGKV-RMLADPN 373
            N    M A     +TKG V R+ + PN
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPN 220


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +2

Query: 119 DSPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSE--IVCVS 292
           D+P NK+   ++T+     L A PG+   G    HL   + N   + +    E  I C+ 
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG--SVHLFDAI-NLSSVSTFNAHEGTIACLK 195

Query: 293 VNDPYVMAAWGAQHNTKGKV-RMLADPN 373
            N    M A     +TKG V R+ + PN
Sbjct: 196 FNQEGNMIATA---STKGTVIRVYSVPN 220


>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 122 SPANKVNTCEITAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKMKSEGVSEIV 283
           +PA++     I     +V   +P AF   C KT L  Y QNA+K + +GV  ++
Sbjct: 111 TPAHEDPNKTILKQDVIVTITLP-AFADYCEKTFLSIYSQNANKGR-QGVEWVI 162


>AL023845-5|CAA19537.1|  111|Caenorhabditis elegans Hypothetical
           protein Y51B9A.7 protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 382 SSKLLTSERTCHRWVDSVRNVSHW*SLTAK*RIGP*NL 495
           + K   +E+   RW +++RN+  W   T K RIG  N+
Sbjct: 22  NQKQRKAEKYLLRWYNALRNLPTWVQKTKKRRIGAYNV 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,061,782
Number of Sequences: 27780
Number of extensions: 282857
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)