Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_F10
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0517 + 9054816-9055655 29 1.2
02_05_1001 + 33423562-33424098 27 3.6
12_02_0291 + 16951154-16952740 27 4.8
08_01_1074 - 11009766-11009819,11010274-11010472,11010555-110108... 27 4.8
01_05_0197 + 19143582-19143618,19143814-19144523 27 4.8
12_02_0295 + 17006064-17007063,17007068-17007666 27 6.3
12_02_0122 + 13923510-13925081 27 6.3
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 27 6.3
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 27 6.3
01_06_0630 - 30723903-30724496 27 6.3
07_01_0501 - 3745447-3746244 26 8.4
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 157 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 291
+++ H C+ W L S P+C LPA+ + + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>02_05_1001 + 33423562-33424098
Length = 178
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 301 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 197
CA S E + + S W PAD+ + WV ERA
Sbjct: 80 CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116
>12_02_0291 + 16951154-16952740
Length = 528
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 374 LPLVKNTRQLRKLSFQVCDRSIISVRPIN 288
L VKN +LRKL D+SII + I+
Sbjct: 276 LTSVKNNSELRKLFLDTTDKSIIVIEDID 304
>08_01_1074 -
11009766-11009819,11010274-11010472,11010555-11010805,
11012049-11012199,11012596-11012710,11012930-11012993
Length = 277
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 300 HANYRAITNLKRQFPQLARVLDQWE 374
+AN + I K QFP+L R + W+
Sbjct: 230 YANKKMIYTAKAQFPRLVRPIQSWD 254
>01_05_0197 + 19143582-19143618,19143814-19144523
Length = 248
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 123 VLCYYDSKSYIRES-------QARMLPTDLEPALSFCTHLLYKSAGIQADTYKM 263
+ +YD KS IR+ + ++ D+E + F HL+ +S G+ D +K+
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKI 185
>12_02_0295 + 17006064-17007063,17007068-17007666
Length = 532
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 365 VKNTRQLRKLSFQVCDRSIISVRPIN 288
VKN +LRKL D+SII + I+
Sbjct: 279 VKNNSELRKLFLDTTDKSIIVIEDID 304
>12_02_0122 + 13923510-13925081
Length = 523
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 374 LPLVKNTRQLRKLSFQVCDRSIISVRPINVQI 279
L VKN +LRKL + +SII + I+ I
Sbjct: 278 LTAVKNNTELRKLYIETTGKSIIVIEDIDCSI 309
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 184 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 297
RTW+ +F + CC S I FH+ RIW+ +G
Sbjct: 170 RTWTYIFGA---CC-----STTVFIPSFHNYRIWSFLG 199
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = +1
Query: 40 RPWSPSPGYW------R*RLRLPTTQHHLVAKAKSSA 132
R WSPS G W R RLPTT+ H + A
Sbjct: 433 RAWSPSVGDWLADRPRTLRFRLPTTKDHTTERISGLA 469
>01_06_0630 - 30723903-30724496
Length = 197
Score = 26.6 bits (56), Expect = 6.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 169 HVCCLRTWSLLFRSAPIC 222
HVCCL W S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163
>07_01_0501 - 3745447-3746244
Length = 265
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 159 ESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 305
E+ R L E A H+L +AG+ D Y +S D DR A
Sbjct: 83 ETGVRALFDAAESAFGAGAHILVANAGLLDDRYPHLSNTPTADFDRTIA 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,767,728
Number of Sequences: 37544
Number of extensions: 178121
Number of successful extensions: 472
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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