Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F07
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   1.4  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    25   1.8  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   2.4  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.1  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    24   4.2  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    24   5.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    24   5.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   5.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    23   7.3  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    23   9.6  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    23   9.6  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    23   9.6  

>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = -3

Query: 190 NLDTREIKFLARKTRQQVFEKHERVHNAFHILPEYWIS 77
           ++ + E+K L++K   Q  + +  + ++FH + ++W S
Sbjct: 375 DISSIEVKDLSQKNTTQSKKLNSYIRDSFHSVNDFWFS 412


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 26  DKYTYVPTALDMYTTCLRDPVFWKNMK 106
           DKY   P A D+ T CL +P  ++  K
Sbjct: 93  DKYKDRPIARDLGTVCLHNPKLFQGNK 119


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = +2

Query: 50  ALDMYT---TCLRDPVFWKNMKRVMNSFVLFKNLLPSFSRE-ELDFPGVQV--ERVVSEK 211
           A+D YT   TC  DP+F+ N      +   F+ ++   S    LD   V+    R  + +
Sbjct: 170 AIDYYTQAITCSHDPIFFSNRAACYAAIGDFEQVIKDTSEALSLDSSYVKALNRRSAAYE 229

Query: 212 MVTFMDEFDLDXTNALYLD 268
            +  +DE  +D T +   D
Sbjct: 230 QLGKLDEALMDSTVSCIFD 248


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 153 FLARNLISLVSKLNALYLKRWSPLWMNLTWXSRMHF 260
           FL +  ISL+S  N+  LK W     N  W  ++ F
Sbjct: 309 FLDKVFISLLSAKNSCSLKMWLIHSFNKGWPVKIEF 344


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -3

Query: 217 DHLFRYNAFNLDTREIKFLARKTRQQVFEKHERVHNAFHILPE 89
           D L  YN  N D   +   A+  R   F    R+HN F +  E
Sbjct: 375 DVLIGYNICNFDIPYLLDRAKSLRIHNFPLLGRIHNFFSVAKE 417


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 218 TFMDEFDLDXTNALYLDQAE 277
           +F  E + D TN+ YLD+ E
Sbjct: 163 SFSSEDNADATNSFYLDEPE 182


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 225 IKVTIFSDTTRSTWTPGKSSSSREKLGSRFLKSTKEFITRFIFFQNTGS 79
           I+  I  D  RS   PG   S R+ L   F K   +  T+  +F +TG+
Sbjct: 452 IRAQINLDVRRSA--PGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGN 498


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 116  NSFVLFKNLLPSFSREEL 169
            NSF LF++LLP F    L
Sbjct: 1591 NSFQLFRSLLPDFDARML 1608


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 144 CLVFLARNLISLVSKLNALYLKRWS 218
           C V    NL+ L S+    YL RWS
Sbjct: 413 CAVPAGENLVFLGSQTTDSYLLRWS 437


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 195 ALYLKRWSPLWMNLTWXSRMHFTWTRLRCQRRSLI 299
           +LY+ RW+  W      SR      +L  ++R ++
Sbjct: 88  SLYMFRWAIAWFCEKRLSRARMNLHKLNAEKRKIL 122


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 92  WKNMKRVMNSFVLFKNLLPSFSREELDF 175
           WK+  R   +F    +LLPS S  +L +
Sbjct: 331 WKDALRTKQNFPYMNHLLPSSSVVDLHY 358


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 79  RSSILEEYETRYELFRAFQ 135
           R SILEE +   EL RAF+
Sbjct: 712 RDSILEETQDYAELVRAFE 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,726
Number of Sequences: 5004
Number of extensions: 22911
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)