Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_F07
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 29 0.67
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 29 0.89
02_05_0313 - 27795152-27795268,27795476-27795515,27795773-277958... 28 1.2
06_01_0741 - 5510159-5510581,5510862-5511124,5511223-5511400,551... 28 1.6
05_04_0300 - 19969066-19969535,19971216-19972686 27 2.1
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 27 2.1
05_06_0038 - 25100851-25101474,25101945-25102058,25102151-251024... 27 2.7
11_03_0171 + 11111534-11113207 26 4.7
04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940... 26 6.3
04_01_0195 + 2279186-2279908,2279957-2280061 26 6.3
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 25 8.3
02_04_0270 - 21439788-21441680 25 8.3
01_05_0645 - 23899579-23904483 25 8.3
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 25 8.3
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 5 SYNQYNMDKYTYVPTALDMYTTCLRDP-----VFWKNMKRVMNSFVLFKNLLPSFS 157
SY Y ++ + + ++ CL D VFWK + F+L K +LP +S
Sbjct: 464 SYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFLLRKLILPFYS 519
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 28.7 bits (61), Expect = 0.89
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 5 SYNQYNMDKYTYVPTALDMYTTCLRDPV-----FWKNMKRVMNSFVLFKNLLPSFS 157
SY Y ++ + + ++ CL D + FWK + F+L K +LP +S
Sbjct: 449 SYEAYRKQQHRWHSGPMQLFRLCLPDIIRCKIAFWKKANLIFLFFLLRKLILPFYS 504
>02_05_0313 -
27795152-27795268,27795476-27795515,27795773-27795873,
27796862-27796921,27797185-27797294,27797911-27798033,
27798148-27798271,27798585-27798642,27798713-27798841,
27799602-27799762
Length = 340
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 14 QYNMDKYTYVPTALDMYTTCLRDPVFWKNMKRVMNSFVLFKNLLPSFSRE 163
Q N + Y +PT Y + + VFW+ K V FK L SF R+
Sbjct: 53 QLNHNYYEMLPTYWSPYLHMIANNVFWRT-KNTAFVAVEFKYLYKSFDRD 101
>06_01_0741 -
5510159-5510581,5510862-5511124,5511223-5511400,
5511411-5511698,5511801-5511899,5511973-5512440,
5512559-5512744,5512887-5513004,5513035-5513228
Length = 738
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 187 LDTREIKFLARKTRQQVFEKHERVHNAF 104
L+ R+IKF + R Q+ +HER N F
Sbjct: 87 LEPRQIKFWFQNRRTQMKAQHERADNCF 114
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 133 EKHERVHNAFHILPEYWIS*ASSVHIESSGNVRVLVHIIL 14
+KH+ HN+ ILP + H++ +GN +++H +L
Sbjct: 392 KKHQPAHNSSEILPALLYVPRNGKHVKINGN--LIIHSVL 429
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 204 LKRWSPLWMNLTWXSRMHFTWTRLRCQRRSLI 299
+KRWS + + W SR F R RRSLI
Sbjct: 98 VKRWSNHKIMVRWLSRFFFYLDRYFISRRSLI 129
>05_06_0038 -
25100851-25101474,25101945-25102058,25102151-25102441,
25102552-25102860,25103458-25104186
Length = 688
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 5 SYNQYNMDKYTYVPTALDMYTTCLRDPV-----FWKNMKRVMNSFVLFKNLLPSFS 157
SY Y ++ + + ++ C D + FWK + F+L K +LP +S
Sbjct: 451 SYEAYRKQQHRWHSGPMQLFRLCFVDIIKSKIGFWKKFNLIFLFFLLRKLILPFYS 506
>11_03_0171 + 11111534-11113207
Length = 557
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 171 ISLVSKLNALYLKRWSPLWMN 233
++L K +LK+WS LW++
Sbjct: 532 VNLFGKRETYFLKKWSKLWLD 552
>04_04_1570 -
34492944-34493159,34493668-34493842,34493964-34494068,
34494454-34494623,34494760-34494830,34494950-34496799,
34497003-34497052,34497147-34497263
Length = 917
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 217 DHLFRYNAFNLDTREIKFLARKTRQQVFEKHERVH 113
D+ F N F+ + ++K +RK ++ ++H+RVH
Sbjct: 120 DNDFSVNTFSNASVDVKRTSRKKSKKKNKRHKRVH 154
>04_01_0195 + 2279186-2279908,2279957-2280061
Length = 275
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 100 ILPEYWIS*ASSVHIESSGNVRVLVHIILI 11
ILP + ++ + HIE +G R+LV +L+
Sbjct: 200 ILPNFSLNGTMTAHIEFNGTTRMLVASLLL 229
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 80 DPVFWKNMKRVMNSFVLFKNLLPSFSREELDFPG 181
D + ++V+N+ L N PS+ + +D PG
Sbjct: 787 DQLVQSKREQVVNTIYLHDNSFPSYLPKSMDLPG 820
>02_04_0270 - 21439788-21441680
Length = 630
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 207 SDTTRSTWTPGKSSSSREKLGSR 139
SD W PG+ S +R +G+R
Sbjct: 524 SDLEEPKWKPGRKSGARMNIGNR 546
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 80 DPVFWKNMKRVMNSFVLFKNLLPSFSREELDFPG 181
D + ++V+N+ L N PS+ + +D PG
Sbjct: 1064 DQLIQTKREQVVNTIYLHDNSFPSYLPKSMDLPG 1097
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 35 TYVPTALDMYTTCLRDPVF--WKNMKRVM 115
TY+P +++ C+R+P F W+ +++M
Sbjct: 167 TYMPEMVEVLIDCVRNPAFLDWEVKEQIM 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,819,858
Number of Sequences: 37544
Number of extensions: 134265
Number of successful extensions: 413
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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