Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_F07
(300 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17205.1 68416.m02196 HECT-domain-containing protein / ubiqui... 28 1.3
At2g24630.1 68415.m02942 glycosyl transferase family 2 protein s... 27 3.1
At5g19660.1 68418.m02339 subtilase family protein contains Pfam ... 26 4.1
At3g19420.1 68416.m02463 expressed protein 26 4.1
At5g02230.2 68418.m00145 haloacid dehalogenase-like hydrolase fa... 26 5.4
At5g02230.1 68418.m00144 haloacid dehalogenase-like hydrolase fa... 26 5.4
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 26 5.4
At3g24010.1 68416.m03016 PHD finger family protein contains Pfam... 26 5.4
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil... 26 5.4
At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1) a... 25 7.1
At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /... 25 7.1
At3g61150.1 68416.m06843 homeobox-leucine zipper family protein ... 25 7.1
At3g55190.1 68416.m06130 esterase/lipase/thioesterase family pro... 25 7.1
At5g44940.1 68418.m05512 F-box family protein contains F-box dom... 25 9.4
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb... 25 9.4
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb... 25 9.4
>At3g17205.1 68416.m02196 HECT-domain-containing protein /
ubiquitin-transferase family protein weak similarity to
ubiquitin-protein ligase 2 [Arabidopsis thaliana]
GI:7108523; contains Pfam profile PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +2
Query: 29 KYTYVPTALDMYTTCLRDPVFWKNMKRVMNS----FVLFKNLLPSFSREELDFPGVQVER 196
KY Y+ + R +F K K ++ FV+ N + EEL PG Q R
Sbjct: 637 KYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEYGERTEEEL-LPGGQDMR 695
Query: 197 VVSEKMVTFM 226
V +E ++TF+
Sbjct: 696 VTNENVITFI 705
>At2g24630.1 68415.m02942 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535
Length = 690
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 5 SYNQYNMDKYTYVPTALDMYTTCLRDPV-----FWKNMKRVMNSFVLFKNLLPSFS 157
SY Y ++ + + ++ CLR + WK ++ F+L K +LP +S
Sbjct: 448 SYEAYKKQQHRWHSGPMQLFRLCLRSILTSKIAMWKKANLILLFFLLRKLILPFYS 503
>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
profile: PF00082 subtilase family
Length = 1038
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 225 IKVTIFSDTTRSTWTP 178
+K+ F D TRS WTP
Sbjct: 729 VKMRFFDDNTRSWWTP 744
>At3g19420.1 68416.m02463 expressed protein
Length = 611
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 92 WKNMKRVMNSFVLFKNLLPSFSREELDFPGVQVERVVSE 208
W N + N +L + L F + +L PG VE V+++
Sbjct: 419 WLNTTMMENRVILKTSELDGFDKRKLPSPGFMVEVVLAD 457
>At5g02230.2 68418.m00145 haloacid dehalogenase-like hydrolase
family protein contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 280
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 124 ERVHNAFHILPEYWIS*ASSVHIESSGNVRV 32
E +HN +PE W S S + SG V V
Sbjct: 244 ENIHNMKEAIPELWESDRKSSDVGYSGKVAV 274
>At5g02230.1 68418.m00144 haloacid dehalogenase-like hydrolase
family protein contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 280
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 124 ERVHNAFHILPEYWIS*ASSVHIESSGNVRV 32
E +HN +PE W S S + SG V V
Sbjct: 244 ENIHNMKEAIPELWESDRKSSDVGYSGKVAV 274
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 25 GQVHVRSHCSRYVHYLLTRSSILEEYETRYELFRAFQKPA 144
G V+ + V + +IL ++ RYE F +KPA
Sbjct: 234 GHVYYEAQIRFKVDDIFNFENILMSFDVRYEKFNTIKKPA 273
>At3g24010.1 68416.m03016 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 234
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +2
Query: 143 LPSFSREELDFPGVQVERVVSEKMVTFMDEFDLDXTNALYLDQAEMPKKKSD 298
L FS E LD V R+ EK+ M +DL + LDQ KKSD
Sbjct: 64 LTKFSEEALDEQKHSV-RIADEKVTLAMQAYDLVDMHVQQLDQY---MKKSD 111
>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
similarity to acyl-CoA oxidase [Arabidopsis thaliana]
GI:3044214
Length = 664
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 80 DPVFWKNMKRVMNSFVLFKNLL 145
DPVF K+ + VM+ LFKN L
Sbjct: 45 DPVFEKSKRAVMSRKELFKNTL 66
>At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1)
annotation temporarily based on supporting cDNA
gi|18483289|gb|AF466153.1|; supporting cDNA are SWITCH1
splice variant S and SWITCH1 splice variant L (SWI1)
GI:16033413 and GI:16033410
Length = 639
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 172 IKFLARKTRQQVFEKHERVHNAFHILPEYWIS*ASSVHIESSGNVR 35
+K +A K ++ R HNA + EYW+ + +HI V+
Sbjct: 346 LKHMAGKVAPGGQDRFMRKHNADGAM-EYWLESSDLIHIRKEAGVK 390
>At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /
cystatin, putative similar to cysteine proteinase
inhibitor [Glycine max] GI:1944342; contains Pfam
profile PF00031: Cystatin domain
Length = 232
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 92 WKNMKRVMNSFVLFKNLLPSFSREELDF 175
W N K++ FKN++PSF+ +L F
Sbjct: 122 WMNFKQLQE----FKNIIPSFTISDLGF 145
>At3g61150.1 68416.m06843 homeobox-leucine zipper family protein /
homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to
Anthocyaninless2 (ANL2) (GP:5702094) Arabidopsis
thaliana, EMBL:AF077335
Length = 808
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 190 NLDTREIKFLARKTRQQVFEKHERVHNA 107
NLD R++KF + R Q+ + ER NA
Sbjct: 148 NLDPRQVKFWFQNRRTQMKTQIERHENA 175
>At3g55190.1 68416.m06130 esterase/lipase/thioesterase family
protein similar to monoglyceride lipase from [Homo
sapiens] GI:14594904, [Mus musculus] GI:2632162;
contains Interpro entry IPR000379
Length = 319
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 131 FKNLLPSFSREELDFPGVQVE-RVVSEKMVTFMDEFDL 241
FK++ P F++E G++ E S + ++D FDL
Sbjct: 53 FKDIAPKFAKEGFAVHGIEYEGHGRSSGLSVYIDNFDL 90
>At5g44940.1 68418.m05512 F-box family protein contains F-box domain
Pfam:PF00646
Length = 377
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 141 CCLVFLARNLISLVSKLNALYLKRWSPLWMNL 236
C L + NL + S ++ KRW LW+N+
Sbjct: 13 CLLTQILLNLPTKDSVKTSVLSKRWRNLWLNV 44
>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
(RbohB) / NADPH oxidase identical to respiratory burst
oxidase protein B from Arabidopsis thaliana [gi:3242783]
Length = 843
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 189 LNALYLKRWSPLWMNLTWXS--RMHFTWTRLRCQRRSL 296
++ +L+ W +W+ W S FTW L+ +R+++
Sbjct: 287 ISYFFLENWKRIWVLTLWISICITLFTWKFLQYKRKTV 324
>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
(RbohB) / NADPH oxidase identical to respiratory burst
oxidase protein B from Arabidopsis thaliana [gi:3242783]
Length = 622
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 189 LNALYLKRWSPLWMNLTWXS--RMHFTWTRLRCQRRSL 296
++ +L+ W +W+ W S FTW L+ +R+++
Sbjct: 287 ISYFFLENWKRIWVLTLWISICITLFTWKFLQYKRKTV 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,471,032
Number of Sequences: 28952
Number of extensions: 114331
Number of successful extensions: 382
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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