Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F06
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)               237   5e-63
SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   2e-05
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                40   0.001
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)           38   0.008
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.011
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)          37   0.011
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_38590| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  28   4.9  
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  27   8.6  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 27   8.6  
SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 298

 Score =  237 bits (580), Expect = 5e-63
 Identities = 97/191 (50%), Positives = 132/191 (69%)
 Frame = +2

Query: 14  TWKAGRNFPTHTPFAHIKILMGALKDDNILKLPKVTHDAELIANLPENFDPRDKWPECPT 193
           TWKAG+NF        +K L GA K   +    K+    +   ++P++FD R++WP CPT
Sbjct: 44  TWKAGKNFAEVYTIEDVKRLCGAKKGPPLPLRKKLLISMD---DVPDHFDSREQWPHCPT 100

Query: 194 LNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPICGLGCNGGMPT 373
           + E+RDQG+CGSCWAFGAVEAM+DR CI+S      H SAEDL+SCC  CG+GCNGG P 
Sbjct: 101 IKEVRDQGACGSCWAFGAVEAMSDRYCIHSEGKVMPHISAEDLLSCCETCGMGCNGGYPE 160

Query: 374 LAWEYWKHVGLVSGGNYNSSQGCRPYEIPPCEHHVPGNRMPCNGDTKTPKCQKNCESSYN 553
            AW++WK  GLV+GG Y+S +GC+PY+I  C+HHV G   PC GD+ TPKC++ CE+ YN
Sbjct: 161 SAWDHWKSKGLVTGGQYDSHKGCQPYKIAACDHHVVGKLKPCKGDSPTPKCERKCEAGYN 220

Query: 554 VPFKKEQRYGK 586
           V +  ++ +G+
Sbjct: 221 VSYSDDKHFGQ 231


>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +2

Query: 176 WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPICG-LG 352
           W +   +  +++QG CGSCWAF    ++  +   +    K    S ++LV C    G  G
Sbjct: 339 WRKEGYVTPVKNQGQCGSCWAFSTTGSLEGQ--NFKKTGKLVSLSEQNLVDCSTAYGNNG 396

Query: 353 CNGGMPTLAWEYWKHVG 403
           C GG+   A++Y K  G
Sbjct: 397 CQGGLMDYAFKYIKENG 413


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +2

Query: 164 PRDKWPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPIC 343
           P   W +   +N ++ QG CGSC+AF    A+     I +        S + +V C    
Sbjct: 501 PHVDWRKAGAVNSVKSQGICGSCYAFAVAGALEGAHFIQTGL--KLDLSEQQIVDCTWGF 558

Query: 344 G-LGCNGGMPTLAWEY-WKHVGLVSGGNY 424
           G  GC GG P  A ++  KH GL +  +Y
Sbjct: 559 GNRGCKGGYPYRAMQWILKHGGLATEESY 587


>SB_4471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 176 WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPICG-LG 352
           W     +  +++QG CGSCWAF    A+  +   +    K    S ++LV C    G  G
Sbjct: 121 WRSKGYVTPVKNQGQCGSCWAFSTTGALEGQ--HFRKTGKLVSLSEQNLVDCSGKYGNNG 178

Query: 353 CNGGMPTLAWEYWKHVG 403
           C GG+   A++Y K  G
Sbjct: 179 CEGGLMDNAFQYIKENG 195


>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 1220

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 176 WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPICG-LG 352
           W +   +  +++QG CGSCWAF    ++  +   +         S ++L+ C    G  G
Sbjct: 49  WSQKGYVTGVKNQGQCGSCWAFSTTGSVEGQ--HFRKTGSLVSLSEQNLIDCSGSYGNNG 106

Query: 353 CNGGMPTLAWEY 388
           C GG+   A+ Y
Sbjct: 107 CQGGLMDNAFRY 118


>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +2

Query: 101 LKLPKVTHDAELIANLPENFDPRDKWPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIY 280
           +KLP V   A +   +P  +   DK      L+    Q  CGSCWAF +  ++  +   +
Sbjct: 306 VKLPDVRALAVVSVTVP-GYLCNDKTEVVLFLHHSALQCQCGSCWAFSSTGSLEGQ--HF 362

Query: 281 SNATKHFHFSAEDLVSCCPICG-LGCNGGMPTLAWEYWK 394
               K    S ++LV C    G  GC GG+   A++Y K
Sbjct: 363 RKTGKLVSLSEQNLVDCSKKYGNNGCEGGLMDYAFKYIK 401


>SB_56676| Best HMM Match : Peptidase_C1 (HMM E-Value=0.0027)
          Length = 295

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +2

Query: 113 KVTHDAELIANLPENFDPRDK--WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSN 286
           K  H+   +A LP +FD RD        T         CGSCWA G   AM DR+ I   
Sbjct: 40  KRPHEYLNMAKLPTSFDWRDVNGTNYASTTRNQHIPQYCGSCWAHGTTSAMADRINILRK 99

Query: 287 ATKH 298
              H
Sbjct: 100 GKWH 103


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 194 LNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHFHFSAEDLVSCCPICG-LGCNGGM- 367
           ++ +R QG CGSC+A  AV A+     + +   K    SA+ ++ C    G  GC GG  
Sbjct: 324 VSPVRGQGICGSCYALAAVGAVEGAYFMKTGKLK--ELSAQQVIDCSWGSGNRGCKGGYY 381

Query: 368 -PTLAWEY 388
              ++W Y
Sbjct: 382 NKAMSWIY 389


>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
          Length = 385

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
 Frame = +2

Query: 32  NFPTHTPFAHIKILMGALKDDNILKLPKVTHDAELIANL-PENFDPRDKWPECPTLNEIR 208
           +FP  T     K   GAL D++  K     HD  +  ++  E  +  +  P    +N  +
Sbjct: 91  HFPDLTD-DEFKSYKGALDDES--KDVMNDHDDVIDDDVNDETQEDEEDEPSDGAVNPAK 147

Query: 209 DQGSCGSCWAF---GAVEA---MTDRVCIYSNAT 292
            QG+CGSCWAF   GAVEA   + +  C  SN T
Sbjct: 148 GQGTCGSCWAFATAGAVEAAHFIQEGFCKTSNLT 181


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +2

Query: 176 WPECPTLNEIRDQGSCGSCWAFGAVEAMTDRVCIYSNATKHF-HFSAEDLVSCCPICG-L 349
           W     +  ++DQ  CGSCW+FG    +   + +    TK+    S ++L+ C    G  
Sbjct: 646 WVIRGAVTPVKDQAVCGSCWSFGTTGTIEGTLFL---KTKYLTRLSQQNLMDCSWGEGNN 702

Query: 350 GCNGGMPTLAWEY-WKHVGLVSGGNYNSSQGCRPY 451
            C+GG    +++Y  K  G+ +  +Y    G   Y
Sbjct: 703 ACDGGEDFRSYQYIMKSGGIATEESYGPYLGADGY 737


>SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = +2

Query: 344 GLGCNGGMPTLAWEYWKHVGLVSGGNYNSSQGCRPYEIPPCEHHVPGNRMPCNGDTKTPK 523
           G+GC+        EY  +    +GG  N    C+        H    N +PCN +  T K
Sbjct: 287 GIGCSLKPKYCVIEYNGNRTCFAGGTLNPGNPCQQCNSNDKFHWTNNNHLPCNDNNSTTK 346


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 420 LPPDTSPTCFQYSQAKVGIPPLQPRPHIGQQLTRSSAE 307
           +PP +  T  + + A V   PL P PHIG +  R+SA+
Sbjct: 444 VPPTSGTTQPEGAAAVVPPLPLSPGPHIGIERPRASAK 481


>SB_38590| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 284

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = -3

Query: 554 RYN*IHSSFGILVF*YHRYRAFCFQVRDVHTVEFRKVGNLGLSYNCHPIQAQRASNIPKL 375
           RYN    S   L + YH  + FCFQV +   V+F  +  LG  Y   P+    +      
Sbjct: 94  RYNTYPMSVQYLSYEYHAGKVFCFQVLE---VDFYTL--LGYVYVALPVVVLTSCYYVVF 148

Query: 374 KLAYHHYNRDR 342
           K+   H  R R
Sbjct: 149 KILRQHQERIR 159


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -2

Query: 414  PDTSPTCFQYSQAKVGIPPLQPRPHIGQQLTRSSAEKWKCLVALE*MHTRSVIASTAPKA 235
            P+  PT         G  PL   PH+  QL+    E  K   A     T++  A+   K+
Sbjct: 857  PECQPTLNSSPSPPTGSGPLTGNPHVTTQLSHGYVESRKTKQASRPSKTKTKEAARPSKS 916

Query: 234  Q 232
            Q
Sbjct: 917  Q 917


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 420 IITQAKVADLTKFHRVNITYLETECPVTVILKHQNAKRTV 539
           +IT     DL KF + ++  L      +V +KHQNA R V
Sbjct: 430 VITYLLDRDLQKFAKEDVYKLLETLAASVSIKHQNAARHV 469


>SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
 Frame = +2

Query: 176 WPECPTLNEIRDQG---SCG-------SCWAFGAVEAMTDRVCIYSNATKHFHFS-AEDL 322
           W  C  +  + D G    CG       SCW    V    D V ++ +       S A D 
Sbjct: 19  WGSCRVVGIMSDLGIMSGCGDHVESWESCWVLEIVSGPGDHVGLWGSCRVLGIMSGAGDH 78

Query: 323 VS---CCPICGLGCNGGMPTLAWEYWKHVGLVSGGNYNSSQG 439
           V     C + G+    G    +WE  + VG++SG    SS G
Sbjct: 79  VEFGGSCRVLGIMSGCGNHVGSWESCRVVGIMSGCGIMSSPG 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,521
Number of Sequences: 59808
Number of extensions: 402882
Number of successful extensions: 1035
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)