Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F05
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      138   4e-33
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      110   8e-25

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  138 bits (333), Expect = 4e-33
 Identities = 76/183 (41%), Positives = 101/183 (55%), Gaps = 2/183 (1%)
 Frame = +3

Query: 3   KLGVMEDPSNRSRLAKLLRFXXXXXXXXXXXXXXXPDRMVFLSEYVARMKPNQHHIYYIA 182
           KLGV+ED SNR+RLAKLLRF                  M  L+EY+ RMK  Q  IY++A
Sbjct: 477 KLGVIEDHSNRTRLAKLLRFYSSNSEKD----------MTSLAEYIERMKEKQDVIYFMA 526

Query: 183 GSSRAEVQRSPFAERLVRRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAEEIFDL-DES 359
           G +R EV+ SPF E+L++ GYEVLYL E VDEYC+ SLPE++G KFQN+A+E   + ++S
Sbjct: 527 GHNRKEVESSPFVEKLLKEGYEVLYLIEPVDEYCMQSLPEFEGKKFQNVAKEGLKIGEDS 586

Query: 360 XXXXXXXXXXXXXXXPLTRWL-GDKLGAWVTRCXXXXXXXXXXXXXXXXXFGWTGNMERL 536
                          PL +WL  D L   + +                  +GW+GNMER+
Sbjct: 587 DKKKKKFEELEKTYEPLLKWLKEDALKDQIEKATISERLHDSPCALVASSYGWSGNMERI 646

Query: 537 ALS 545
             S
Sbjct: 647 MRS 649


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  110 bits (264), Expect = 8e-25
 Identities = 61/178 (34%), Positives = 84/178 (47%)
 Frame = +3

Query: 3   KLGVMEDPSNRSRLAKLLRFXXXXXXXXXXXXXXXPDRMVFLSEYVARMKPNQHHIYYIA 182
           KLG+ ED  NR++LA LLR+                D +  L +YV RMK NQ  IY+I 
Sbjct: 377 KLGIHEDSVNRAKLADLLRYHSSSSG----------DELTSLKDYVTRMKENQKDIYFIT 426

Query: 183 GSSRAEVQRSPFAERLVRRGYEVLYLTEAVDEYCLSSLPEYDGHKFQNIAEEIFDLDESX 362
           G S+ +V  S F ER+  RG+EVLY+ E +DEY +  L EYDG K  ++ +E  +L E  
Sbjct: 427 GESKDQVSHSAFVERVKSRGFEVLYMVEPIDEYAIQQLKEYDGKKLVSVTKEGLELPEDE 486

Query: 363 XXXXXXXXXXXXXXPLTRWLGDKLGAWVTRCXXXXXXXXXXXXXXXXXFGWTGNMERL 536
                          L + + D L   + +                  FGWT NMER+
Sbjct: 487 DEKKAREEKVAKYEGLCKVIKDILDKKIEKVVVSSRLVSSPCCIVTSQFGWTANMERI 544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,521,624
Number of Sequences: 59808
Number of extensions: 96486
Number of successful extensions: 226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)