Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F04
         (468 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   1.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   1.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   5.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   9.9  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 6/14 (42%), Positives = 6/14 (42%)
 Frame = -2

Query: 125 WGESQWFRHRHSPP 84
           W    W  H H PP
Sbjct: 45  WEPQMWHHHSHMPP 58


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 6/14 (42%), Positives = 6/14 (42%)
 Frame = -2

Query: 125 WGESQWFRHRHSPP 84
           W    W  H H PP
Sbjct: 45  WEPQMWHHHSHMPP 58


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 308 HHKCGG 291
           HHKCGG
Sbjct: 264 HHKCGG 269


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 318 VSSPSQMRRTAPGALVVT 265
           +SSPS  +  +PG L  T
Sbjct: 72  ISSPSSTKSGSPGFLTYT 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,059
Number of Sequences: 336
Number of extensions: 3041
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)