Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F04
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)                   31   0.36 
SB_44507| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_34673| Best HMM Match : UK (HMM E-Value=0.6)                        28   4.4  
SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   27   5.9  
SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)                      27   5.9  
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_45398| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_19810| Best HMM Match : Cathelicidins (HMM E-Value=4.8)             27   7.7  

>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
          Length = 636

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 306 SQMRRTAPGALVVTSGRFTSGRVSHSCGDIPPHPFT 199
           +Q+RR + G    T+   TS R +H+  DIP  PFT
Sbjct: 577 NQLRRFSKGPYATTTA--TSSRTAHALTDIPKRPFT 610


>SB_44507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 425 SYGVLRKTIHVN-CDVTRVLHYKSNYFYLLGLYFGFPYRPHHKC-GGRPRGL 276
           SYG   + +++  C  T+ + YK   F  L + FG P +P  +  GGR  GL
Sbjct: 340 SYGCWPQQLNLAVCPFTKKITYKKAAFERLCIEFGLPRKPDFRWKGGRNHGL 391


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +2

Query: 203 KGCGGMSPHEC-ETRPDVKRPEVTTKAPGAVRRICDGDDTGIQNKDLTNRNSY-SCNEGH 376
           K C      +C  TRP   +   TTKAP      C G   G +  D  N N +  C+ G+
Sbjct: 484 KHCDNPENVQCGPTRPPTPKVPPTTKAPFTKSPFCVGKQNG-KYADANNCNGFVMCSNGY 542

Query: 377 V 379
           +
Sbjct: 543 I 543


>SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 342 VRSLFWIPVSSPSQMRRTAPGALVVTSGRFTSGRVSHS 229
           +RS+F   V+SP+ + +  P     TS    SGR SH+
Sbjct: 248 LRSVFLREVTSPNSICQRNPNPFSTTSDMMNSGRESHA 285


>SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = -1

Query: 381 HTCPSLQE*LFLFVRSLFWIPVSSPSQMRRTAPGAL-VVTSGRFTSG-RVSHSCGDIPPH 208
           H  PS Q   F++ RS+      +   +    PG L  VT+     G  V+ SC D+P  
Sbjct: 185 HRAPSHQ---FIYARSM-----QTEGYVTSLRPGYLEAVTNSYMLKGVLVNQSCSDVPHF 236

Query: 207 PFTHCNSVATSLLPDEALMVEYWXKSWXGREPVVQASAFS 88
            +T  ++    ++ D+   +  W       +P ++   F+
Sbjct: 237 RYTAGSNYLNEMIKDKRDSLSRWSTHSQTVDPSIEEGNFT 276


>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
          Length = 641

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 227 HECETRPDVKRPEVTTKAPGAVRRICDGDDTGIQNKDLTNR 349
           HE    PD  RP+ TT  PG  + + +  D   +  D+++R
Sbjct: 206 HEATDEPD--RPQETTDVPGRSQEVTNAPDRQQEANDVSDR 244


>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 329 FGFPYRPHHKCGGRPRGL 276
           F + +RPH   GGRP GL
Sbjct: 219 FEYAFRPHESFGGRPFGL 236


>SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)
          Length = 566

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 365 YKSNYFYLLGLYFGFPYRPHHKC-GGRPRGL 276
           YK   F  L + FG P +PH +  GGR  GL
Sbjct: 422 YKKAAFERLCIEFGLPRKPHFRWKGGRNHGL 452


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 368  HYKSNYFYLLGLYFGFPYRPHHKC-GGRPRGL 276
            HYK   F  L + FG P +P  +  GGR  GL
Sbjct: 1506 HYKKAAFERLCIEFGLPRKPDFRWKGGRNHGL 1537


>SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 191 LQWVKGCGGMSPHECETRPDVKRPEVTTKAP 283
           +QW    G +  HE E+RP + RP   +++P
Sbjct: 26  VQWCAKLGHVHVHERESRPRLPRPRHFSQSP 56


>SB_45398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 103 GIGILPPSPLGLSTDEARWACRRGDAVQ 20
           GI I P SPL   TD+A+ A R+  + Q
Sbjct: 360 GIRIKPSSPLNALTDDAQVALRQSPSTQ 387


>SB_19810| Best HMM Match : Cathelicidins (HMM E-Value=4.8)
          Length = 204

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 252 TSGRVSHSCGDIPPHPFTHCNSVATSLLPDEALMVEYWXKSWXGREPVVQASAFSPHP 79
           T G + +   D+PP P +  +SV  +  P    +   W  +  GR   +Q SA    P
Sbjct: 78  TLGHLRYRLTDVPPQPNSQPDSVFDTDRPFPVQLRPGWASASPGRVHWLQVSARQTQP 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,976,013
Number of Sequences: 59808
Number of extensions: 425542
Number of successful extensions: 1722
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)