Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F04
         (468 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093661-1|AAH93661.1|  125|Homo sapiens chromosome 14 open read...    32   0.86 
AK098639-1|BAC05361.1|  125|Homo sapiens protein ( Homo sapiens ...    31   2.0  
AY358164-1|AAQ88531.1|  529|Homo sapiens APEM9336 protein.             30   4.6  
AL031587-3|CAI18966.1|  529|Homo sapiens protein ( udogene simil...    30   4.6  
AL022322-1|CAI17932.1|  529|Homo sapiens protein ( Human DNA seq...    30   4.6  

>BC093661-1|AAH93661.1|  125|Homo sapiens chromosome 14 open reading
           frame 177 protein.
          Length = 125

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
 Frame = +2

Query: 170 RREVATELQWVKGCGGMSPHECETRPDVKRPEVTTKAPGAVRRICDGDDTGIQNKD--LT 343
           R+E    L+  +G     PH+  T+P + RP V+    G              NK   LT
Sbjct: 3   RKEPGARLEATRGAA--RPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLR-HNKQHALT 59

Query: 344 NRNSYSCNEGHV*RHSLRVSSCVEHHRTSPPSCN 445
              +  C E      +   S C  H  TSP SCN
Sbjct: 60  LTKARCCGECSTCFCTEEKSECQRHEETSPGSCN 93


>AK098639-1|BAC05361.1|  125|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25773 fis, clone TST06517. ).
          Length = 125

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
 Frame = +2

Query: 212 GGMSPHECETRPDVKRPEVTTKAPGAVRRICDGDDTGIQNKD--LTNRNSYSCNEGHV*R 385
           G   PH+  T+P + RP V+    G              NK   LT   +  C E     
Sbjct: 15  GAARPHKQGTKPMITRPSVSQLGEGKCPSSQHLQSLR-HNKQHALTLTKARCCGECSTCF 73

Query: 386 HSLRVSSCVEHHRTSPPSCN 445
            +   S C  H  TSP SCN
Sbjct: 74  CTEEKSECQRHEETSPGSCN 93


>AY358164-1|AAQ88531.1|  529|Homo sapiens APEM9336 protein.
          Length = 529

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 339 RSLFWIPVS--SPSQMRRTAPGALVVTSGR-FTSGRVSHSCGDIPPHPFTHCNS 187
           R L W   S  S S  R  +PG L    G  + SGR++ +C D+PP P    +S
Sbjct: 212 RVLLWKEQSEASRSPSRAHSPGLLGPALGPPYPSGRLTPTCLDMPPRPLGEFSS 265


>AL031587-3|CAI18966.1|  529|Homo sapiens protein ( udogene similar
           to part of  ).).
          Length = 529

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 339 RSLFWIPVS--SPSQMRRTAPGALVVTSGR-FTSGRVSHSCGDIPPHPFTHCNS 187
           R L W   S  S S  R  +PG L    G  + SGR++ +C D+PP P    +S
Sbjct: 212 RVLLWKEQSEASRSPSRAHSPGLLGPALGPPYPSGRLTPTCLDMPPRPLGEFSS 265


>AL022322-1|CAI17932.1|  529|Homo sapiens protein ( Human DNA
           sequence from clone CTA-228A9 on chromosome
           22q12.3-13.32.ontains part of the SLC5A1 gene for solute
           carrier family 5  ).
          Length = 529

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 339 RSLFWIPVS--SPSQMRRTAPGALVVTSGR-FTSGRVSHSCGDIPPHPFTHCNS 187
           R L W   S  S S  R  +PG L    G  + SGR++ +C D+PP P    +S
Sbjct: 212 RVLLWKEQSEASRSPSRAHSPGLLGPALGPPYPSGRLTPTCLDMPPRPLGEFSS 265


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,771,808
Number of Sequences: 237096
Number of extensions: 2253813
Number of successful extensions: 6254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6251
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)