Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F04
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine r...    29   2.2  
AF125448-4|AAN63406.1|  453|Caenorhabditis elegans Hypothetical ...    28   2.9  
AF125448-3|AAD12809.1|  575|Caenorhabditis elegans Hypothetical ...    28   2.9  
AF125448-2|AAL32228.1|  582|Caenorhabditis elegans Hypothetical ...    28   2.9  
AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical ...    28   2.9  
U70857-8|AAB09173.2|  256|Caenorhabditis elegans C.elegans homeo...    28   3.8  
AC024201-18|AAF36026.1|  430|Caenorhabditis elegans Hypothetical...    27   6.7  
AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical...    27   6.7  
AC006685-6|AAK84576.1|   65|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein92 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 452 SLYYRKEGMSYGVLRKTIHVNCDVTRVLHYKSNYF-YLLGLYF 327
           SL Y  E  S  +++    +   +TR L+Y  NY  Y   LYF
Sbjct: 125 SLIYLYESRSSLIVKNKFKITSSMTRALYYSLNYMSYFPTLYF 167


>AF125448-4|AAN63406.1|  453|Caenorhabditis elegans Hypothetical
           protein H14E04.2d protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 13  VSIAPHRPCDKPTGPRLYLGPMGMGGECRCLNHWLSPXPTLRPI--LYHESF 162
           V + PH   D  TGP ++LG +G     +    W     +L  +   + ESF
Sbjct: 335 VVVMPHPNADTKTGPEIHLGTVGAMSAMKKYEKWDGEEDSLAKVRETFAESF 386


>AF125448-3|AAD12809.1|  575|Caenorhabditis elegans Hypothetical
           protein H14E04.2a protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 13  VSIAPHRPCDKPTGPRLYLGPMGMGGECRCLNHWLSPXPTLRPI--LYHESF 162
           V + PH   D  TGP ++LG +G     +    W     +L  +   + ESF
Sbjct: 457 VVVMPHPNADTKTGPEIHLGTVGAMSAMKKYEKWDGEEDSLAKVRETFAESF 508


>AF125448-2|AAL32228.1|  582|Caenorhabditis elegans Hypothetical
           protein H14E04.2c protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 13  VSIAPHRPCDKPTGPRLYLGPMGMGGECRCLNHWLSPXPTLRPI--LYHESF 162
           V + PH   D  TGP ++LG +G     +    W     +L  +   + ESF
Sbjct: 464 VVVMPHPNADTKTGPEIHLGTVGAMSAMKKYEKWDGEEDSLAKVRETFAESF 515


>AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical
           protein H14E04.2b protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 13  VSIAPHRPCDKPTGPRLYLGPMGMGGECRCLNHWLSPXPTLRPI--LYHESF 162
           V + PH   D  TGP ++LG +G     +    W     +L  +   + ESF
Sbjct: 460 VVVMPHPNADTKTGPEIHLGTVGAMSAMKKYEKWDGEEDSLAKVRETFAESF 511


>U70857-8|AAB09173.2|  256|Caenorhabditis elegans C.elegans homeobox
           protein 34 protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 195 CNSVATSLLPDEALMVEYWXKSWXGREPVVQASAFSPHPH 76
           C  V  S+L  +AL V +  ++W     +++ S FSPH H
Sbjct: 52  CYQVMESVLKAQAL-VYFTTQNWKMLYKLLECSKFSPHNH 90


>AC024201-18|AAF36026.1|  430|Caenorhabditis elegans Hypothetical
           protein Y71F9B.14 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = -1

Query: 321 PVSSPSQMRRTAPGALVVTSG---RFTSGRVSHSCGDIPPHPFTHCNSVATSLLPDEA 157
           P + P   R T P A+V T       T+     S   +PP P T   S+  +  P EA
Sbjct: 233 PATDPP--RTTIPPAIVTTEAIPPEVTTTTSESSTAPVPPEPLTSAPSMVATTDPPEA 288


>AC006834-10|AAF40005.1|  745|Caenorhabditis elegans Hypothetical
           protein ZK973.1 protein.
          Length = 745

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 155 RASSGRREVATELQWVKGCGGMSPHECETRPDVKRPEVTTKAP 283
           R  +GR     EL+ VKG G ++  +C     V RP+     P
Sbjct: 541 REQNGRFRSRAELKEVKGIGALTFQQCAGFLTVSRPDDAEDGP 583


>AC006685-6|AAK84576.1|   65|Caenorhabditis elegans Hypothetical
           protein T13G4.7 protein.
          Length = 65

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 321 PVSSPSQMRRTAPGALVVTSGRFTSGRVSHSCGDIPPHPFTHCNS 187
           P  + SQ         +  +GR TS   +    ++PPHP  +C +
Sbjct: 19  PSMTSSQPANVERSREIPQTGRLTSANEASQQQNVPPHPNGNCRA 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,734,834
Number of Sequences: 27780
Number of extensions: 299113
Number of successful extensions: 775
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)