Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_F04
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   3.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   6.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   6.6  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   6.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   6.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.6  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 52  GPRLYLGPMGMGGECRC 102
           GP+ YLG    G +C C
Sbjct: 71  GPQNYLGICAEGMQCSC 87


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 416 VLRKTIHVNCDVTRVLHYKSNY 351
           +L  TIH N +  ++ +Y  NY
Sbjct: 307 LLNNTIHNNNNYKKLQYYNINY 328


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 416 VLRKTIHVNCDVTRVLHYKSNY 351
           +L  TIH N +  ++ +Y  NY
Sbjct: 318 LLNNTIHNNNNYKKLQYYNINY 339


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 416 VLRKTIHVNCDVTRVLHYKSNY 351
           +L  TIH N +  ++ +Y  NY
Sbjct: 318 LLNNTIHNNNNYKKLQYYNINY 339


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 416 VLRKTIHVNCDVTRVLHYKSNY 351
           +L  TIH N +  ++ +Y  NY
Sbjct: 307 LLNNTIHNNNNYKKLQYYNINY 328


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 398 VSSCVEHHRTSPPS 439
           V+S  E+H  +PPS
Sbjct: 504 VASLTEYHHVAPPS 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,840
Number of Sequences: 438
Number of extensions: 3856
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)